Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38223 * 119.59919 * 2 1 4 4 C 1.38575 * 118.99118 * 180.02562 * 3 2 1 5 5 C 1.38737 * 118.55838 * 359.97438 * 4 3 2 6 6 C 1.38180 * 119.34872 * 0.02562 * 5 4 3 7 7 N 1.31683 * 119.59760 * 180.02562 * 2 1 3 8 8 C 1.51483 * 109.58533 * 180.25048 * 6 5 4 9 9 C 1.54500 * 105.13373 * 342.43698 * 8 6 5 10 10 C 1.51219 * 130.69639 * 179.97438 * 5 4 3 11 11 H 1.09000 * 110.31170 * 316.07556 * 10 5 4 12 12 C 1.50708 * 110.31273 * 78.24921 * 10 5 4 13 13 H 1.07998 * 120.00100 * 118.54493 * 12 10 5 14 14 C 1.37881 * 119.99560 * 298.55062 * 12 10 5 15 15 N 1.31512 * 120.00442 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99573 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46943 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46996 * 119.99827 * 16 14 12 19 19 H 1.48495 * 109.46635 * 239.99801 * 16 14 12 20 20 H 1.09004 * 109.47273 * 269.97650 * 1 2 3 21 21 H 1.08995 * 109.47079 * 29.98186 * 1 2 3 22 22 H 1.08998 * 109.46923 * 149.98268 * 1 2 3 23 23 H 1.08002 * 120.50200 * 0.02562 * 3 2 1 24 24 H 1.07998 * 120.72006 * 180.02562 * 4 3 2 25 25 H 1.08998 * 110.29508 * 101.45788 * 8 6 5 26 26 H 1.08997 * 110.28874 * 223.58909 * 8 6 5 27 27 H 1.09005 * 111.02146 * 268.38289 * 9 8 6 28 28 H 1.08993 * 110.86346 * 144.85826 * 9 8 6 29 29 H 0.96993 * 120.00129 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2018 0.0000 4 6 3.5754 1.1871 -0.0005 5 6 4.2257 -0.0384 -0.0005 6 6 3.4792 -1.2012 -0.0005 7 7 2.1574 -1.1450 -0.0005 8 6 4.4058 -2.3995 0.0058 9 6 5.7790 -1.8499 -0.4405 10 6 5.7006 -0.3720 -0.0015 11 1 6.2316 0.2623 -0.7114 12 6 6.2755 -0.2061 1.3817 13 1 6.7059 -1.0545 1.8929 14 6 6.2519 1.0289 1.9944 15 7 5.7282 2.0621 1.3717 16 14 6.9638 1.2344 3.7092 17 1 7.4876 -0.0704 4.1873 18 1 8.0672 2.2274 3.6713 19 1 5.9019 1.7092 4.6322 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6514 2.1381 0.0004 24 1 4.1370 2.1097 -0.0001 25 1 4.4728 -2.8204 1.0090 26 1 4.0538 -3.1532 -0.6986 27 1 5.8987 -1.9271 -1.5212 28 1 6.5895 -2.3649 0.0751 29 1 5.7119 2.9309 1.8026 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260441339.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = 4.680820 kcal Electronic energy + Delta-G solvation = -12904.236734 eV Core-core repulsion = 10790.798609 eV Total energy + Delta-G solvation = -2113.438125 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.32781 -37.55788 -34.61989 -32.92409 -32.01840 -29.24325 -27.56189 -25.92387 -23.31896 -21.91353 -21.29269 -18.62125 -17.34207 -16.46663 -16.18107 -15.82670 -15.41886 -14.81533 -14.28698 -14.05238 -13.57377 -13.28987 -12.96485 -12.92673 -12.73089 -12.63230 -12.45697 -12.17681 -11.97866 -11.38825 -11.16152 -10.63352 -10.22272 -9.96063 -9.13766 -8.10816 -6.26932 0.48090 0.75960 1.37632 1.40489 1.50432 2.39099 3.09261 3.15638 3.28547 4.04666 4.11555 4.33482 4.41950 4.47949 4.62138 4.71705 4.86095 4.90058 4.96572 5.09264 5.19794 5.24156 5.30496 5.44800 5.56249 5.66398 5.84243 6.02945 6.17987 6.24531 6.81343 7.31859 7.39570 8.89141 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.012925 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.174740 B = 2165.753683 C = 2624.526759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.196 4.196 4 C -0.061 4.061 5 C -0.113 4.113 6 C 0.074 3.926 7 N -0.510 5.510 8 C -0.048 4.048 9 C -0.106 4.106 10 C 0.067 3.933 11 H 0.007 0.993 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.015 3.985 15 N -0.903 5.903 16 Si 0.953 3.047 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.288 1.288 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.074 0.926 23 H 0.147 0.853 24 H 0.138 0.862 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 -2.870 -2.231 6.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.216 4.216 4 C -0.087 4.087 5 C -0.115 4.115 6 C -0.062 4.062 7 N -0.221 5.221 8 C -0.086 4.086 9 C -0.144 4.144 10 C 0.048 3.952 11 H 0.025 0.975 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.185 4.185 15 N -0.541 5.541 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.214 1.214 20 H 0.097 0.903 21 H 0.111 0.889 22 H 0.093 0.907 23 H 0.165 0.835 24 H 0.156 0.844 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.195 -3.462 -2.206 7.431 hybrid contribution 0.995 1.429 1.054 2.035 sum -5.200 -2.033 -1.152 5.701 Atomic orbital electron populations 1.20632 0.86400 1.03931 1.03284 1.21602 0.98216 0.87754 0.97607 1.22148 0.94517 0.99769 1.05167 1.21810 0.93921 0.99554 0.93425 1.21986 0.99452 0.93686 0.96386 1.22263 0.89426 0.97040 0.97475 1.66618 1.09465 1.30694 1.15358 1.20841 0.92091 0.93471 1.02182 1.22353 0.96115 0.95789 1.00125 1.18318 0.88108 0.92944 0.95789 0.97484 1.21457 1.37716 0.95116 1.01443 0.91975 1.25734 0.95547 0.95931 1.01275 1.69941 1.44958 1.00548 1.38687 0.85565 0.77998 0.78348 0.80130 1.19034 1.20272 1.21434 0.90277 0.88912 0.90712 0.83517 0.84398 0.90382 0.89269 0.91145 0.90142 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.32 10.17 71.24 0.72 -1.60 15 2 C 0.09 3.38 6.78 42.58 0.29 3.67 15 3 C -0.20 -7.98 9.75 22.35 0.22 -7.76 15 4 C -0.06 -2.96 8.90 22.47 0.20 -2.76 15 5 C -0.11 -5.63 5.13 -19.59 -0.10 -5.73 15 6 C 0.07 3.41 7.32 42.72 0.31 3.72 15 7 N -0.51 -22.33 10.26 -171.16 -1.76 -24.09 15 8 C -0.05 -1.87 6.77 30.61 0.21 -1.66 15 9 C -0.11 -4.22 6.59 31.57 0.21 -4.01 15 10 C 0.07 3.38 2.82 -11.65 -0.03 3.35 15 11 H 0.01 0.39 8.14 -2.39 -0.02 0.37 15 12 C -0.52 -27.97 8.53 25.60 0.22 -27.75 15 13 H 0.06 3.26 7.57 -2.91 -0.02 3.24 15 14 C 0.01 0.80 5.32 84.66 0.45 1.25 15 15 N -0.90 -49.92 9.71 21.45 0.21 -49.72 15 16 Si 0.95 43.10 29.54 68.60 2.03 45.13 15 17 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 20 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.09 2.01 8.08 -2.39 -0.02 1.99 15 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.15 4.88 8.06 -2.91 -0.02 4.86 15 24 H 0.14 7.10 6.09 -2.91 -0.02 7.09 15 25 H 0.08 2.99 8.14 -2.39 -0.02 2.97 15 26 H 0.09 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.07 2.49 8.14 -2.38 -0.02 2.47 15 28 H 0.08 3.00 7.74 -2.39 -0.02 2.98 15 29 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -61.33 243.61 4.30 -57.03 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.13 Total: 10.94 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 2.69 Total: -39.29 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.55 Total: -73.80 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -61.33 4.30 -57.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441339.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.709 kcal (2) G-P(sol) polarization free energy of solvation -61.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds