Wall clock time and date at job start Mon Mar 30 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38229 * 119.59724 * 2 1 4 4 C 1.38580 * 118.98729 * 180.02562 * 3 2 1 5 5 C 1.38737 * 118.56101 * 359.97438 * 4 3 2 6 6 C 1.38356 * 119.44496 * 0.07501 * 5 4 3 7 7 N 1.32116 * 119.54600 * 180.14184 * 2 1 3 8 8 C 1.51476 * 109.61050 * 180.02562 * 6 5 4 9 9 C 1.54339 * 105.22027 * 342.72482 * 8 6 5 10 10 C 1.51224 * 130.69727 * 179.97438 * 5 4 3 11 11 H 1.08997 * 110.30826 * 78.14721 * 10 5 4 12 12 C 1.50707 * 110.30735 * 316.07525 * 10 5 4 13 13 H 1.07991 * 120.00354 * 329.07018 * 12 10 5 14 14 C 1.37879 * 119.99486 * 149.34626 * 12 10 5 15 15 N 1.31517 * 120.00012 * 4.90472 * 14 12 10 16 16 Si 1.86797 * 119.99826 * 184.89310 * 14 12 10 17 17 H 1.48501 * 109.47077 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47027 * 120.00461 * 16 14 12 19 19 H 1.48497 * 109.47473 * 240.00282 * 16 14 12 20 20 H 1.08995 * 109.46932 * 89.99930 * 1 2 3 21 21 H 1.09005 * 109.46925 * 209.99629 * 1 2 3 22 22 H 1.08994 * 109.46741 * 329.99494 * 1 2 3 23 23 H 1.07997 * 120.50197 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.72262 * 179.97438 * 4 3 2 25 25 H 1.08998 * 110.29463 * 223.78191 * 8 6 5 26 26 H 1.09008 * 110.37211 * 101.69674 * 8 6 5 27 27 H 1.09000 * 110.82172 * 268.11810 * 9 8 6 28 28 H 1.08993 * 110.99562 * 144.63805 * 9 8 6 29 29 H 0.96996 * 119.99781 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.2019 0.0000 4 6 3.5754 1.1872 -0.0005 5 6 4.2257 -0.0384 -0.0005 6 6 3.4802 -1.2039 -0.0015 7 7 2.1585 -1.1494 -0.0028 8 6 4.4083 -2.4010 -0.0007 9 6 5.7810 -1.8499 -0.4413 10 6 5.7007 -0.3720 -0.0015 11 1 6.1168 -0.2502 0.9985 12 6 6.4347 0.5051 -0.9830 13 1 5.9341 0.8555 -1.8734 14 6 7.7471 0.8555 -0.7468 15 7 8.3883 0.3474 0.2830 16 14 8.6146 2.0515 -1.8897 17 1 7.6808 2.4757 -2.9636 18 1 9.0551 3.2419 -1.1186 19 1 9.7974 1.3885 -2.4950 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3632 0.8899 0.5139 23 1 1.6513 2.1381 -0.0004 24 1 4.1370 2.1097 -0.0010 25 1 4.0574 -3.1519 -0.7085 26 1 4.4759 -2.8280 1.0000 27 1 5.9008 -1.9273 -1.5219 28 1 6.5920 -2.3636 0.0747 29 1 9.3117 0.5936 0.4489 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260441342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:21 Heat of formation + Delta-G solvation = 15.562493 kcal Electronic energy + Delta-G solvation = -12610.339488 eV Core-core repulsion = 10497.373228 eV Total energy + Delta-G solvation = -2112.966260 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87883 -35.90561 -32.68120 -31.76317 -30.54066 -27.67421 -26.13359 -23.80191 -22.05606 -20.42715 -19.59228 -16.59262 -15.78786 -15.09827 -14.55406 -14.26676 -13.95318 -13.45696 -12.71756 -12.26040 -12.06878 -11.87682 -11.81748 -11.39310 -11.11802 -11.02951 -10.61719 -10.52787 -10.16317 -9.59707 -9.31627 -8.92212 -8.51740 -8.49508 -7.69140 -6.11494 -4.14826 1.82940 2.06843 3.24422 3.33234 3.37572 4.34903 4.47235 4.59667 5.17316 5.28462 5.55036 5.56793 5.80516 5.85121 5.90133 6.03135 6.08045 6.11925 6.25560 6.52151 6.65444 6.83483 6.94013 7.05362 7.12660 7.45690 7.48863 7.65413 7.83801 8.29610 8.69032 8.91608 9.49305 10.97502 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.009852 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.716137 B = 2841.276805 C = 3274.535688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.093 3.907 3 C -0.180 4.180 4 C -0.065 4.065 5 C -0.101 4.101 6 C 0.099 3.901 7 N -0.489 5.489 8 C -0.068 4.068 9 C -0.105 4.105 10 C 0.070 3.930 11 H 0.074 0.926 12 C -0.509 4.509 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 -0.194 0.033 8.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.200 4.200 4 C -0.091 4.091 5 C -0.103 4.103 6 C -0.038 4.038 7 N -0.199 5.199 8 C -0.106 4.106 9 C -0.144 4.144 10 C 0.051 3.949 11 H 0.092 0.908 12 C -0.547 4.547 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.289 -0.958 0.122 9.339 hybrid contribution 1.024 1.553 -0.607 1.956 sum -8.265 0.594 -0.484 8.301 Atomic orbital electron populations 1.20550 0.89800 1.02459 1.02151 1.20953 0.96052 0.88293 0.99125 1.21739 0.94923 0.98447 1.04896 1.21106 0.93126 0.98534 0.96285 1.22325 1.00552 0.92813 0.94568 1.22071 0.88714 0.96720 0.96337 1.66754 1.09877 1.29511 1.13739 1.21063 0.94283 0.93857 1.01428 1.22484 0.92965 0.98212 1.00733 1.18470 0.85221 0.91810 0.99399 0.90811 1.21017 0.96456 1.30523 1.06670 0.92517 1.24997 0.97455 0.95883 0.95322 1.69938 1.11107 1.43232 1.28537 0.86545 0.79600 0.81067 0.80895 1.19681 1.20886 1.20934 0.91375 0.91246 0.91455 0.85863 0.85197 0.91526 0.90718 0.91953 0.91463 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.17 36.01 0.37 -0.84 15 2 C 0.09 1.67 6.79 -82.47 -0.56 1.11 15 3 C -0.18 -3.18 9.75 -39.46 -0.38 -3.56 15 4 C -0.06 -1.33 9.92 -39.27 -0.39 -1.72 15 5 C -0.10 -2.28 5.61 -104.14 -0.58 -2.86 15 6 C 0.10 2.13 7.32 -81.97 -0.60 1.53 15 7 N -0.49 -10.00 10.29 -5.33 -0.05 -10.06 15 8 C -0.07 -1.33 6.77 -26.80 -0.18 -1.51 15 9 C -0.11 -2.31 6.58 -25.30 -0.17 -2.48 15 10 C 0.07 1.72 2.87 -91.93 -0.26 1.46 15 11 H 0.07 1.99 7.50 -51.93 -0.39 1.61 15 12 C -0.51 -13.60 8.08 -34.44 -0.28 -13.87 15 13 H 0.06 1.54 7.82 -52.49 -0.41 1.13 15 14 C 0.07 1.77 5.45 -17.82 -0.10 1.67 15 15 N -0.89 -24.96 12.90 55.43 0.72 -24.25 15 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 15 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.07 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.12 1.74 8.06 -52.49 -0.42 1.32 15 24 H 0.13 2.57 8.06 -52.49 -0.42 2.14 15 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 26 H 0.07 1.34 8.14 -51.92 -0.42 0.91 15 27 H 0.06 1.38 7.91 -51.93 -0.41 0.97 15 28 H 0.07 1.46 8.14 -51.93 -0.42 1.03 15 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 249.79 15.07 3.76 3.76 Total: -1.00 -28.93 249.79 -7.46 -36.39 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.72 Total: -0.55 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.14 Total: -21.07 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.66 Total: -34.31 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.93 -7.46 -36.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.955 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds