Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38229 * 119.59724 * 2 1 4 4 C 1.38580 * 118.98729 * 180.02562 * 3 2 1 5 5 C 1.38737 * 118.56101 * 359.97438 * 4 3 2 6 6 C 1.38356 * 119.44496 * 0.07501 * 5 4 3 7 7 N 1.32116 * 119.54600 * 180.14184 * 2 1 3 8 8 C 1.51476 * 109.61050 * 180.02562 * 6 5 4 9 9 C 1.54339 * 105.22027 * 342.72482 * 8 6 5 10 10 C 1.51224 * 130.69727 * 179.97438 * 5 4 3 11 11 H 1.08997 * 110.30826 * 78.14721 * 10 5 4 12 12 C 1.50707 * 110.30735 * 316.07525 * 10 5 4 13 13 H 1.07991 * 120.00354 * 329.07018 * 12 10 5 14 14 C 1.37879 * 119.99486 * 149.34626 * 12 10 5 15 15 N 1.31517 * 120.00012 * 4.90472 * 14 12 10 16 16 Si 1.86797 * 119.99826 * 184.89310 * 14 12 10 17 17 H 1.48501 * 109.47077 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47027 * 120.00461 * 16 14 12 19 19 H 1.48497 * 109.47473 * 240.00282 * 16 14 12 20 20 H 1.08995 * 109.46932 * 89.99930 * 1 2 3 21 21 H 1.09005 * 109.46925 * 209.99629 * 1 2 3 22 22 H 1.08994 * 109.46741 * 329.99494 * 1 2 3 23 23 H 1.07997 * 120.50197 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.72262 * 179.97438 * 4 3 2 25 25 H 1.08998 * 110.29463 * 223.78191 * 8 6 5 26 26 H 1.09008 * 110.37211 * 101.69674 * 8 6 5 27 27 H 1.09000 * 110.82172 * 268.11810 * 9 8 6 28 28 H 1.08993 * 110.99562 * 144.63805 * 9 8 6 29 29 H 0.96996 * 119.99781 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.2019 0.0000 4 6 3.5754 1.1872 -0.0005 5 6 4.2257 -0.0384 -0.0005 6 6 3.4802 -1.2039 -0.0015 7 7 2.1585 -1.1494 -0.0028 8 6 4.4083 -2.4010 -0.0007 9 6 5.7810 -1.8499 -0.4413 10 6 5.7007 -0.3720 -0.0015 11 1 6.1168 -0.2502 0.9985 12 6 6.4347 0.5051 -0.9830 13 1 5.9341 0.8555 -1.8734 14 6 7.7471 0.8555 -0.7468 15 7 8.3883 0.3474 0.2830 16 14 8.6146 2.0515 -1.8897 17 1 7.6808 2.4757 -2.9636 18 1 9.0551 3.2419 -1.1186 19 1 9.7974 1.3885 -2.4950 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3632 0.8899 0.5139 23 1 1.6513 2.1381 -0.0004 24 1 4.1370 2.1097 -0.0010 25 1 4.0574 -3.1519 -0.7085 26 1 4.4759 -2.8280 1.0000 27 1 5.9008 -1.9273 -1.5219 28 1 6.5920 -2.3636 0.0747 29 1 9.3117 0.5936 0.4489 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260441342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = -0.739819 kcal Electronic energy + Delta-G solvation = -12611.046409 eV Core-core repulsion = 10497.373228 eV Total energy + Delta-G solvation = -2113.673182 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.43582 -37.55053 -34.60815 -33.35143 -31.95784 -29.47181 -27.59512 -25.69193 -23.59440 -21.92092 -21.37905 -18.58987 -17.42564 -16.73247 -16.32833 -15.79628 -15.49363 -14.85531 -14.33911 -13.92295 -13.72623 -13.19528 -13.16309 -13.00707 -12.86220 -12.64464 -12.40920 -12.32565 -11.92907 -11.42893 -11.22891 -10.58947 -10.45771 -10.08808 -9.28984 -8.16843 -6.26810 0.31454 0.50031 1.38844 1.41467 1.52727 2.40768 2.92583 3.11293 3.16449 3.93920 3.95819 4.23534 4.33636 4.41534 4.53356 4.57685 4.82983 4.86927 4.90440 5.01155 5.12400 5.22671 5.26910 5.38445 5.50365 5.55599 5.76731 5.78702 5.99368 6.29298 6.83328 7.16809 7.39913 8.91790 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.009852 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.716137 B = 2841.276805 C = 3274.535688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.172 4.172 4 C -0.078 4.078 5 C -0.139 4.139 6 C 0.088 3.912 7 N -0.503 5.503 8 C -0.059 4.059 9 C -0.100 4.100 10 C 0.066 3.934 11 H 0.037 0.963 12 C -0.519 4.519 13 H 0.047 0.953 14 C 0.018 3.982 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.279 1.279 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.097 0.903 23 H 0.166 0.834 24 H 0.127 0.873 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 0.443 -0.535 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C -0.191 4.191 4 C -0.104 4.104 5 C -0.141 4.141 6 C -0.049 4.049 7 N -0.214 5.214 8 C -0.097 4.097 9 C -0.138 4.138 10 C 0.047 3.953 11 H 0.055 0.945 12 C -0.557 4.557 13 H 0.065 0.935 14 C -0.181 4.181 15 N -0.562 5.562 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.104 0.896 21 H 0.091 0.909 22 H 0.116 0.884 23 H 0.183 0.817 24 H 0.145 0.855 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.299 -0.328 -0.449 11.313 hybrid contribution 1.523 1.392 -0.411 2.104 sum -9.775 1.064 -0.860 9.871 Atomic orbital electron populations 1.20695 0.85948 1.04218 1.03753 1.21878 0.98496 0.87641 0.96405 1.22145 0.93590 1.00352 1.03000 1.21315 0.94812 0.97740 0.96484 1.22231 0.99385 0.94532 0.97948 1.22226 0.89433 0.96651 0.96589 1.66882 1.09094 1.30902 1.14512 1.20977 0.92219 0.93766 1.02688 1.22300 0.94668 0.96839 1.00017 1.18333 0.86726 0.93195 0.97018 0.94471 1.21225 0.96882 1.30850 1.06714 0.93483 1.25726 0.98125 0.97477 0.96795 1.70048 1.11422 1.44575 1.30113 0.85560 0.78427 0.78986 0.79038 1.19302 1.20352 1.20479 0.89646 0.90877 0.88400 0.81692 0.85470 0.89498 0.89285 0.92754 0.92040 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.17 71.24 0.72 -1.22 15 2 C 0.09 3.08 6.79 42.51 0.29 3.37 15 3 C -0.17 -5.57 9.75 22.35 0.22 -5.35 15 4 C -0.08 -3.15 9.92 22.47 0.22 -2.93 15 5 C -0.14 -6.38 5.61 -19.55 -0.11 -6.48 15 6 C 0.09 3.73 7.32 42.77 0.31 4.04 15 7 N -0.50 -19.68 10.29 -170.79 -1.76 -21.43 15 8 C -0.06 -2.26 6.77 30.55 0.21 -2.05 15 9 C -0.10 -4.49 6.58 31.52 0.21 -4.28 15 10 C 0.07 3.39 2.87 -11.64 -0.03 3.36 15 11 H 0.04 2.13 7.50 -2.39 -0.02 2.11 15 12 C -0.52 -28.53 8.08 25.60 0.21 -28.32 15 13 H 0.05 2.61 7.82 -2.92 -0.02 2.59 15 14 C 0.02 0.98 5.45 84.65 0.46 1.44 15 15 N -0.92 -53.17 12.90 21.45 0.28 -52.89 15 16 Si 0.95 43.19 29.54 68.60 2.03 45.22 15 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.07 1.58 8.14 -2.38 -0.02 1.56 15 22 H 0.10 1.57 8.08 -2.39 -0.02 1.55 15 23 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 24 H 0.13 5.07 8.06 -2.91 -0.02 5.04 15 25 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 26 H 0.09 3.14 8.14 -2.38 -0.02 3.12 15 27 H 0.05 2.47 7.91 -2.39 -0.02 2.45 15 28 H 0.06 2.76 8.14 -2.39 -0.02 2.74 15 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 15 Total: -1.00 -63.10 249.79 4.38 -58.72 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.13 Total: 8.83 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 2.71 Total: -38.43 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.48 Total: -74.33 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -63.10 4.38 -58.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.977 kcal (2) G-P(sol) polarization free energy of solvation -63.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds