Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.17702 * 54.29746 * 10 9 7 12 12 N 1.48051 * 110.20887 * 292.46464 * 10 9 7 13 13 C 1.48249 * 103.78997 * 268.52722 * 12 10 9 14 14 C 1.51181 * 105.68650 * 332.39157 * 13 12 10 15 15 C 1.38182 * 131.77646 * 197.53026 * 14 13 12 16 16 C 1.38219 * 120.03199 * 179.97438 * 15 14 13 17 17 C 1.38264 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38225 * 119.99869 * 0.02562 * 17 16 15 19 19 C 1.38174 * 120.03131 * 359.97438 * 18 17 16 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.00905 * 111.00152 * 27.91722 * 12 10 9 24 24 H 1.08994 * 110.19257 * 213.33997 * 13 12 10 25 25 H 1.09003 * 110.20736 * 91.45023 * 13 12 10 26 26 H 1.08006 * 119.98836 * 359.97438 * 15 14 13 27 27 H 1.08001 * 120.00193 * 180.02562 * 16 15 14 28 28 H 1.07996 * 120.00258 * 180.02562 * 17 16 15 29 29 H 1.08007 * 119.97993 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9435 -3.5598 0.8313 12 7 2.9812 -3.7058 -1.2834 13 6 2.1648 -4.6101 -2.1280 14 6 1.4610 -5.5417 -1.1676 15 6 0.8369 -6.7599 -1.3575 16 6 0.2607 -7.4164 -0.2862 17 6 0.3091 -6.8545 0.9762 18 6 0.9332 -5.6360 1.1668 19 6 1.5094 -4.9792 0.0964 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 3.0466 -2.7865 -1.6942 24 1 2.8070 -5.1781 -2.8010 25 1 1.4348 -4.0356 -2.6984 26 1 0.7992 -7.1993 -2.3434 27 1 -0.2266 -8.3686 -0.4351 28 1 -0.1407 -7.3676 1.8132 29 1 0.9712 -5.1975 2.1531 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = 19.517015 kcal Electronic energy + Delta-G solvation = -12605.255183 eV Core-core repulsion = 10492.460404 eV Total energy + Delta-G solvation = -2112.794779 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.92421 -36.23959 -33.28350 -31.26106 -29.58792 -28.72896 -25.39311 -23.47017 -22.33026 -20.80164 -19.88552 -16.81438 -16.14366 -15.31491 -14.95623 -14.64847 -13.75054 -13.43132 -13.29841 -12.66336 -12.42146 -12.17018 -11.95935 -11.69607 -11.09935 -10.82322 -10.56065 -10.42916 -10.30055 -10.07739 -8.76895 -8.61160 -8.47696 -8.39514 -7.63452 -6.43458 -4.14801 1.63575 1.68734 3.41634 3.43015 3.61818 4.05317 4.49335 4.79598 4.95055 5.09535 5.23707 5.28558 5.36055 5.75903 5.77803 5.86507 5.94432 6.20705 6.30804 6.39072 6.49677 6.67874 6.74384 6.86588 7.07940 7.26679 7.31939 7.48642 7.95978 8.09780 8.37982 8.78895 9.58825 10.96478 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055332 B = 0.008535 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.913748 B = 3279.921296 C = 3505.037691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.070 2.930 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.606 4.606 8 H 0.055 0.945 9 C -0.003 4.003 10 C 0.116 3.884 11 H 0.085 0.915 12 N -0.655 5.655 13 C 0.079 3.921 14 C -0.105 4.105 15 C -0.106 4.106 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.105 4.105 19 C -0.079 4.079 20 H 0.268 0.732 21 H 0.014 0.986 22 H 0.007 0.993 23 H 0.358 0.642 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -11.169 -1.411 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.644 4.644 8 H 0.073 0.927 9 C -0.041 4.041 10 C 0.006 3.994 11 H 0.103 0.897 12 N -0.285 5.285 13 C -0.050 4.050 14 C -0.105 4.105 15 C -0.125 4.125 16 C -0.150 4.150 17 C -0.141 4.141 18 C -0.124 4.124 19 C -0.079 4.079 20 H 0.079 0.921 21 H 0.032 0.968 22 H 0.025 0.975 23 H 0.177 0.823 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.048 -9.970 -1.236 10.253 hybrid contribution -0.744 -1.175 -0.160 1.400 sum 1.304 -11.145 -1.396 11.308 Atomic orbital electron populations 1.70790 1.06979 1.30633 1.46052 1.25880 0.96465 1.02811 0.93513 0.83528 0.74863 0.75188 0.76655 1.20833 1.21343 1.21302 1.21997 0.94457 0.91510 1.56423 0.92657 1.19717 0.94672 0.93029 0.96699 1.21162 0.94385 0.90553 0.93291 0.89705 1.63772 1.44816 1.16342 1.03590 1.21383 0.94905 0.93842 0.94881 1.20702 0.98753 0.95141 0.95952 1.20412 0.98937 0.94290 0.98842 1.20935 1.01117 1.00002 0.92896 1.20997 1.00126 0.95808 0.97133 1.20526 0.98446 0.94935 0.98443 1.20976 0.96986 0.96363 0.93598 0.92131 0.96755 0.97497 0.82343 0.90227 0.92851 0.86542 0.86282 0.86210 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.65 55.43 0.76 -26.93 15 2 C 0.02 0.50 5.46 -17.82 -0.10 0.41 15 3 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.61 -16.77 8.22 -34.44 -0.28 -17.05 15 8 H 0.06 1.50 7.69 -52.48 -0.40 1.10 15 9 C 0.00 -0.08 3.83 -27.88 -0.11 -0.19 15 10 C 0.12 2.53 3.32 -68.00 -0.23 2.30 15 11 H 0.09 1.90 8.14 -51.93 -0.42 1.48 15 12 N -0.65 -13.25 7.60 -106.85 -0.81 -14.06 15 13 C 0.08 1.42 7.31 -4.00 -0.03 1.39 15 14 C -0.10 -1.90 6.26 -104.33 -0.65 -2.55 15 15 C -0.11 -1.62 10.04 -39.61 -0.40 -2.02 15 16 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 15 17 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 15 18 C -0.11 -1.82 10.04 -39.61 -0.40 -2.22 15 19 C -0.08 -1.54 5.57 -104.34 -0.58 -2.12 15 20 H 0.27 8.22 7.22 -40.82 -0.29 7.93 15 21 H 0.01 0.39 8.01 -51.93 -0.42 -0.03 15 22 H 0.01 0.19 7.91 -51.93 -0.41 -0.23 15 23 H 0.36 7.52 7.64 -39.29 -0.30 7.22 15 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.12 1.46 8.06 -52.48 -0.42 1.04 15 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.12 1.93 8.06 -52.48 -0.42 1.51 15 LS Contribution 247.76 15.07 3.73 3.73 Total: -1.00 -30.33 247.76 -8.55 -38.88 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.58 Total: 5.02 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.57 Total: -26.50 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.06 Total: -40.99 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.33 -8.55 -38.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.399 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds