Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.17702 * 54.29746 * 10 9 7 12 12 N 1.48051 * 110.20887 * 292.46464 * 10 9 7 13 13 C 1.48249 * 103.78997 * 268.52722 * 12 10 9 14 14 C 1.51181 * 105.68650 * 332.39157 * 13 12 10 15 15 C 1.38182 * 131.77646 * 197.53026 * 14 13 12 16 16 C 1.38219 * 120.03199 * 179.97438 * 15 14 13 17 17 C 1.38264 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38225 * 119.99869 * 0.02562 * 17 16 15 19 19 C 1.38174 * 120.03131 * 359.97438 * 18 17 16 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.00905 * 111.00152 * 27.91722 * 12 10 9 24 24 H 1.08994 * 110.19257 * 213.33997 * 13 12 10 25 25 H 1.09003 * 110.20736 * 91.45023 * 13 12 10 26 26 H 1.08006 * 119.98836 * 359.97438 * 15 14 13 27 27 H 1.08001 * 120.00193 * 180.02562 * 16 15 14 28 28 H 1.07996 * 120.00258 * 180.02562 * 17 16 15 29 29 H 1.08007 * 119.97993 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9435 -3.5598 0.8313 12 7 2.9812 -3.7058 -1.2834 13 6 2.1648 -4.6101 -2.1280 14 6 1.4610 -5.5417 -1.1676 15 6 0.8369 -6.7599 -1.3575 16 6 0.2607 -7.4164 -0.2862 17 6 0.3091 -6.8545 0.9762 18 6 0.9332 -5.6360 1.1668 19 6 1.5094 -4.9792 0.0964 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 3.0466 -2.7865 -1.6942 24 1 2.8070 -5.1781 -2.8010 25 1 1.4348 -4.0356 -2.6984 26 1 0.7992 -7.1993 -2.3434 27 1 -0.2266 -8.3686 -0.4351 28 1 -0.1407 -7.3676 1.8132 29 1 0.9712 -5.1975 2.1531 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = -0.291251 kcal Electronic energy + Delta-G solvation = -12606.114134 eV Core-core repulsion = 10492.460404 eV Total energy + Delta-G solvation = -2113.653730 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32776 -37.70913 -35.35469 -32.72186 -30.98823 -30.42489 -27.18507 -25.21621 -23.95500 -22.09579 -21.46903 -18.96167 -17.59409 -16.56782 -16.41510 -16.14266 -15.63103 -15.09683 -14.74128 -14.43394 -14.01040 -13.88010 -13.27060 -13.15902 -12.83056 -12.64780 -12.31842 -12.06462 -11.93219 -11.72243 -10.76870 -10.61406 -10.07401 -9.78704 -9.18407 -8.74120 -6.46374 0.37447 0.42053 1.52285 1.60211 1.79595 2.53690 2.79175 3.08838 3.41193 3.49577 3.62850 4.08079 4.18516 4.34998 4.45826 4.48912 4.56155 4.64801 4.75638 4.92274 4.98623 5.11062 5.24683 5.48676 5.50432 5.54451 5.84255 5.89319 6.06027 6.11248 6.28365 6.48740 7.36879 8.65512 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055332 B = 0.008535 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.913748 B = 3279.921296 C = 3505.037691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.035 4.035 3 Si 1.120 2.880 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.613 4.613 8 H 0.058 0.942 9 C 0.009 3.991 10 C 0.122 3.878 11 H 0.069 0.931 12 N -0.655 5.655 13 C 0.078 3.922 14 C -0.123 4.123 15 C -0.106 4.106 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.117 4.117 20 H 0.252 0.748 21 H -0.013 1.013 22 H -0.016 1.016 23 H 0.350 0.650 24 H 0.108 0.892 25 H 0.045 0.955 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.154 0.846 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 -12.876 -1.890 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.940 3.060 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.650 4.650 8 H 0.077 0.923 9 C -0.029 4.029 10 C 0.012 3.988 11 H 0.087 0.913 12 N -0.284 5.284 13 C -0.051 4.051 14 C -0.123 4.123 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.118 4.118 20 H 0.061 0.939 21 H 0.005 0.995 22 H 0.002 0.998 23 H 0.167 0.833 24 H 0.126 0.874 25 H 0.063 0.937 26 H 0.166 0.834 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.391 -11.716 -1.717 12.080 hybrid contribution -0.891 -0.774 -0.001 1.180 sum 1.501 -12.490 -1.718 12.697 Atomic orbital electron populations 1.70933 1.08131 1.29655 1.48495 1.27475 0.96449 1.06926 0.92409 0.82903 0.74050 0.70788 0.78220 1.21127 1.19484 1.18955 1.22344 0.94794 0.92513 1.55395 0.92334 1.19545 0.94755 0.94518 0.94127 1.20886 0.93343 0.90851 0.93727 0.91288 1.63768 1.45072 1.16096 1.03438 1.21484 0.95062 0.93611 0.94897 1.20883 0.99955 0.96505 0.94987 1.20844 0.97627 0.93000 1.00952 1.21483 0.99352 1.01030 0.91878 1.21422 0.98773 0.94507 0.98938 1.20768 0.99072 0.96310 0.97997 1.20893 0.99387 0.95975 0.95554 0.93859 0.99451 0.99823 0.83302 0.87433 0.93685 0.83362 0.82017 0.82801 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.67 13.65 21.45 0.29 -58.38 15 2 C -0.04 -2.03 5.46 84.65 0.46 -1.57 15 3 Si 1.12 50.15 29.90 68.60 2.05 52.20 15 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.61 -34.88 8.22 25.60 0.21 -34.67 15 8 H 0.06 3.23 7.69 -2.91 -0.02 3.21 15 9 C 0.01 0.47 3.83 29.85 0.11 0.59 15 10 C 0.12 5.53 3.32 44.10 0.15 5.68 15 11 H 0.07 3.25 8.14 -2.39 -0.02 3.23 15 12 N -0.65 -26.95 7.60 -491.97 -3.74 -30.69 15 13 C 0.08 2.77 7.31 85.45 0.62 3.39 15 14 C -0.12 -4.32 6.26 -19.68 -0.12 -4.44 15 15 C -0.11 -2.89 10.04 22.25 0.22 -2.67 15 16 C -0.12 -2.85 10.05 22.27 0.22 -2.62 15 17 C -0.12 -3.13 10.05 22.27 0.22 -2.91 15 18 C -0.12 -4.22 10.04 22.25 0.22 -4.00 15 19 C -0.12 -4.66 5.57 -19.68 -0.11 -4.77 15 20 H 0.25 16.21 7.22 -92.71 -0.67 15.54 15 21 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 15 22 H -0.02 -0.95 7.91 -2.38 -0.02 -0.97 15 23 H 0.35 15.08 7.64 -89.69 -0.69 14.39 15 24 H 0.11 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 26 H 0.15 3.05 8.06 -2.91 -0.02 3.03 15 27 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 28 H 0.15 2.96 8.06 -2.91 -0.02 2.94 15 29 H 0.12 3.92 8.06 -2.91 -0.02 3.90 15 Total: -1.00 -67.39 247.76 1.38 -66.01 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.55 Total: 18.86 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 2.22 Total: -48.00 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -3.45 Total: -89.07 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -67.39 1.38 -66.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.716 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds