Wall clock time and date at job start Mon Mar 30 2020 02:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48492 * 109.46967 * 270.00145 * 3 2 1 5 5 H 1.48502 * 109.46853 * 30.00296 * 3 2 1 6 6 H 1.48499 * 109.46581 * 150.00170 * 3 2 1 7 7 C 1.37878 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99373 * 179.34935 * 7 2 1 9 9 C 1.50702 * 120.00156 * 359.34803 * 7 2 1 10 10 C 1.50700 * 112.90565 * 65.70521 * 9 7 2 11 11 C 1.38671 * 120.42016 * 55.51816 * 10 9 7 12 12 C 1.38626 * 118.42428 * 180.02562 * 11 10 9 13 13 C 1.38233 * 119.15787 * 359.97438 * 12 11 10 14 14 N 1.31856 * 120.76254 * 0.02562 * 13 12 11 15 15 C 1.31886 * 121.72518 * 359.69516 * 14 13 12 16 16 C 1.53771 * 113.61575 * 294.45087 * 9 7 2 17 17 C 1.53775 * 87.08564 * 270.88548 * 16 9 7 18 18 C 1.53779 * 87.17224 * 334.52687 * 17 16 9 19 19 H 0.97001 * 120.00119 * 355.00408 * 1 2 3 20 20 H 1.08008 * 120.78837 * 0.02562 * 11 10 9 21 21 H 1.08002 * 120.42557 * 180.02562 * 12 11 10 22 22 H 1.07995 * 119.61564 * 179.97438 * 13 12 11 23 23 H 1.07998 * 119.61486 * 180.32028 * 15 14 13 24 24 H 1.09003 * 113.61423 * 156.33380 * 16 9 7 25 25 H 1.09007 * 113.61493 * 25.43741 * 16 9 7 26 26 H 1.09001 * 113.61522 * 89.11547 * 17 16 9 27 27 H 1.08995 * 113.61825 * 219.93576 * 17 16 9 28 28 H 1.08998 * 113.62126 * 140.01877 * 18 17 16 29 29 H 1.09006 * 113.61598 * 270.92815 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0112 9 6 1.2510 -2.4992 0.0137 10 6 0.4507 -2.7281 -1.2425 11 6 1.0674 -2.6932 -2.4840 12 6 0.2916 -2.9089 -3.6125 13 6 -1.0613 -3.1504 -3.4635 14 7 -1.6140 -3.1764 -2.2667 15 6 -0.9059 -2.9809 -1.1714 16 6 0.4506 -2.7343 1.3055 17 6 1.7157 -3.3971 1.8756 18 6 2.1158 -3.7065 0.4233 19 1 -0.4850 0.8369 0.0732 20 1 2.1270 -2.5025 -2.5699 21 1 0.7386 -2.8893 -4.5954 22 1 -1.6727 -3.3190 -4.3376 23 1 -1.3928 -3.0147 -0.2080 24 1 -0.3853 -3.4228 1.1820 25 1 0.1704 -1.8145 1.8190 26 1 2.3877 -2.6987 2.3743 27 1 1.5118 -4.2869 2.4713 28 1 3.1790 -3.5711 0.2250 29 1 1.7343 -4.6604 0.0590 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260722607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:55 Heat of formation + Delta-G solvation = 48.676359 kcal Electronic energy + Delta-G solvation = -13071.442552 eV Core-core repulsion = 10959.912217 eV Total energy + Delta-G solvation = -2111.530335 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.45351 -37.35115 -32.31710 -31.38710 -30.20007 -26.27195 -24.66559 -23.61757 -22.15835 -21.03395 -18.41558 -16.36789 -16.05850 -15.00118 -14.68033 -14.46368 -13.79488 -13.27310 -12.85588 -12.26847 -12.03012 -11.69254 -11.29865 -11.01198 -10.99175 -10.73036 -10.19637 -9.92434 -9.51989 -9.30996 -9.03321 -8.68077 -8.49026 -8.27687 -7.72549 -6.08229 -4.17754 2.18359 2.37042 3.24735 3.32888 3.34510 4.34921 4.86276 5.18122 5.36536 5.68224 5.81917 5.92040 5.96309 6.02069 6.14107 6.30375 6.33137 6.54764 6.66870 6.76678 6.83925 6.91588 7.12174 7.19298 7.37226 7.52225 7.72950 7.83501 7.85092 8.33373 8.82982 8.95756 9.48128 10.97048 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.015558 C = 0.012192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.753332 B = 1799.286332 C = 2296.120130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.101 3.899 10 C -0.044 4.044 11 C -0.076 4.076 12 C -0.185 4.185 13 C 0.055 3.945 14 N -0.497 5.497 15 C 0.099 3.901 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.137 4.137 19 H 0.262 0.738 20 H 0.123 0.877 21 H 0.116 0.884 22 H 0.136 0.864 23 H 0.146 0.854 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -4.707 -1.768 5.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.100 3.900 10 C -0.046 4.046 11 C -0.102 4.102 12 C -0.205 4.205 13 C -0.102 4.102 14 N -0.206 5.206 15 C -0.057 4.057 16 C -0.165 4.165 17 C -0.168 4.168 18 C -0.174 4.174 19 H 0.072 0.928 20 H 0.141 0.859 21 H 0.134 0.866 22 H 0.153 0.847 23 H 0.163 0.837 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.567 -4.730 -1.760 5.078 hybrid contribution 1.292 1.339 -0.198 1.872 sum 1.860 -3.390 -1.957 4.334 Atomic orbital electron populations 1.69964 1.05727 1.26965 1.48038 1.24961 0.94833 0.98939 0.94494 0.86652 0.79966 0.83614 0.78147 1.20715 1.21172 1.19832 1.20645 0.92371 0.88566 1.52288 0.92048 1.18322 0.91656 0.92842 0.87160 1.21269 0.94927 0.91395 0.96991 1.21322 1.00188 0.96610 0.92039 1.21919 0.95741 1.03938 0.98893 1.22298 0.92674 1.00205 0.94982 1.67533 1.40329 1.13736 0.98977 1.22565 0.91432 0.95716 0.95996 1.22911 0.94557 0.99356 0.99692 1.22614 0.99781 0.98892 0.95529 1.23067 0.99461 0.97927 0.96991 0.92837 0.85902 0.86612 0.84681 0.83667 0.93072 0.90863 0.90673 0.94008 0.92708 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.76 11.94 55.43 0.66 -23.09 15 2 C 0.07 1.88 5.21 -17.82 -0.09 1.79 15 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.50 -12.76 7.73 -34.44 -0.27 -13.03 15 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 15 9 C 0.10 2.34 0.59 -155.86 -0.09 2.24 15 10 C -0.04 -1.00 4.30 -104.48 -0.45 -1.45 15 11 C -0.08 -1.62 9.54 -39.28 -0.37 -1.99 15 12 C -0.18 -3.51 10.11 -39.44 -0.40 -3.91 15 13 C 0.06 1.08 11.18 -17.54 -0.20 0.88 15 14 N -0.50 -10.97 10.36 -13.25 -0.14 -11.11 15 15 C 0.10 2.27 10.31 -17.55 -0.18 2.09 15 16 C -0.13 -2.80 6.18 -25.93 -0.16 -2.96 15 17 C -0.13 -2.55 7.79 -25.92 -0.20 -2.75 15 18 C -0.14 -2.75 7.23 -25.78 -0.19 -2.94 15 19 H 0.26 6.98 8.32 -40.82 -0.34 6.64 15 20 H 0.12 2.51 8.06 -52.48 -0.42 2.09 15 21 H 0.12 1.79 8.06 -52.49 -0.42 1.37 15 22 H 0.14 2.15 8.06 -52.49 -0.42 1.73 15 23 H 0.15 3.28 5.96 -52.49 -0.31 2.96 15 24 H 0.05 1.06 6.25 -51.93 -0.32 0.73 15 25 H 0.07 1.78 7.41 -51.92 -0.38 1.40 15 26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.05 1.07 8.10 -51.93 -0.42 0.65 15 29 H 0.06 1.05 8.10 -51.93 -0.42 0.63 15 LS Contribution 245.74 15.07 3.70 3.70 Total: -1.00 -27.59 245.74 -6.92 -34.50 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.52 Total: 2.46 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.60 Total: -22.02 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.52 Total: -34.20 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.59 -6.92 -34.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.180 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds