Wall clock time and date at job start Mon Mar 30 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48501 * 109.46742 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46823 * 120.00046 * 3 2 1 6 6 H 1.48496 * 109.47087 * 240.00395 * 3 2 1 7 7 C 1.37880 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00191 * 186.92871 * 7 2 1 9 9 C 1.50705 * 119.99974 * 6.91912 * 7 2 1 10 10 N 1.46500 * 115.54983 * 39.30590 * 9 7 2 11 11 C 1.39675 * 119.99979 * 65.48803 * 10 9 7 12 12 C 1.38913 * 120.07407 * 6.23723 * 11 10 9 13 13 C 1.38099 * 119.92237 * 179.76364 * 12 11 10 14 14 C 1.38288 * 120.07564 * 0.52073 * 13 12 11 15 15 C 1.38281 * 120.14895 * 359.73519 * 14 13 12 16 16 C 1.38104 * 120.07413 * 0.02562 * 15 14 13 17 17 C 1.53000 * 117.49721 * 253.60014 * 9 7 2 18 18 C 1.52994 * 117.49676 * 184.97543 * 9 7 2 19 19 H 0.97002 * 119.99590 * 354.98456 * 1 2 3 20 20 H 0.97001 * 119.99974 * 245.48933 * 10 9 7 21 21 H 1.08006 * 120.03721 * 0.02562 * 12 11 10 22 22 H 1.08003 * 119.96488 * 180.25170 * 13 12 11 23 23 H 1.08002 * 119.92218 * 179.72254 * 14 13 12 24 24 H 1.08002 * 119.96405 * 180.02562 * 15 14 13 25 25 H 1.08005 * 120.03540 * 180.02562 * 16 15 14 26 26 H 1.08997 * 117.50072 * 359.97438 * 17 9 7 27 27 H 1.09005 * 117.49942 * 145.02227 * 17 9 7 28 28 H 1.08997 * 117.49832 * 214.97523 * 18 9 7 29 29 H 1.08993 * 117.50154 * 0.02562 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1976 0.1123 9 6 1.2592 -2.4944 -0.1583 10 7 0.1516 -2.4755 -1.1170 11 6 0.4077 -2.2816 -2.4763 12 6 1.7170 -2.2362 -2.9384 13 6 1.9665 -2.0493 -4.2838 14 6 0.9151 -1.8967 -5.1690 15 6 -0.3892 -1.9361 -4.7116 16 6 -0.6460 -2.1276 -3.3682 17 6 1.1046 -3.3752 1.0831 18 6 2.0642 -3.7895 -0.0343 19 1 -0.4849 0.8369 0.0734 20 1 -0.7597 -2.5975 -0.8078 21 1 2.5386 -2.3511 -2.2470 22 1 2.9841 -2.0179 -4.6444 23 1 1.1133 -1.7462 -6.2200 24 1 -1.2081 -1.8170 -5.4056 25 1 -1.6650 -2.1587 -3.0117 26 1 1.5424 -3.0144 2.0138 27 1 0.1786 -3.9408 1.1868 28 1 1.7694 -4.6277 -0.6657 29 1 3.1326 -3.7012 0.1618 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260752031.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:20 Heat of formation + Delta-G solvation = 51.799190 kcal Electronic energy + Delta-G solvation = -12889.913535 eV Core-core repulsion = 10778.518616 eV Total energy + Delta-G solvation = -2111.394919 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.46660 -36.47158 -32.31095 -32.15662 -29.88876 -27.37876 -25.64632 -21.96407 -21.38439 -20.91410 -19.32744 -16.94621 -16.11847 -15.00199 -14.68534 -14.50583 -13.66016 -13.10373 -12.99322 -12.43504 -12.07184 -12.01520 -11.14599 -10.97739 -10.66568 -10.61581 -10.43768 -10.23451 -9.89807 -9.74033 -9.13711 -8.66726 -8.26824 -8.00012 -6.35561 -5.94014 -4.18738 2.37940 2.63435 3.26432 3.32118 3.35460 4.32355 4.63027 4.88055 4.98575 5.46832 5.76722 5.80172 6.06481 6.15865 6.29078 6.35709 6.47132 6.58611 6.63511 6.79043 6.85825 6.97999 7.18794 7.37463 7.47456 7.53111 7.70467 7.86525 8.13548 8.64964 8.87246 9.09357 9.45494 10.92347 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.015061 C = 0.011841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.190975 B = 1858.662820 C = 2364.012616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.084 3.916 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.277 3.723 10 N -0.674 5.674 11 C 0.263 3.737 12 C -0.181 4.181 13 C -0.084 4.084 14 C -0.214 4.214 15 C -0.081 4.081 16 C -0.218 4.218 17 C -0.200 4.200 18 C -0.219 4.219 19 H 0.262 0.738 20 H 0.387 0.613 21 H 0.128 0.872 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 -3.570 -4.168 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.123 4.123 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.190 3.810 10 N -0.293 5.293 11 C 0.154 3.846 12 C -0.203 4.203 13 C -0.103 4.103 14 C -0.234 4.234 15 C -0.100 4.100 16 C -0.242 4.242 17 C -0.239 4.239 18 C -0.258 4.258 19 H 0.071 0.929 20 H 0.220 0.780 21 H 0.146 0.854 22 H 0.123 0.877 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.309 -3.441 -4.052 5.325 hybrid contribution -0.015 0.971 0.250 1.002 sum 0.294 -2.471 -3.802 4.544 Atomic orbital electron populations 1.69944 1.06047 1.27045 1.46596 1.24944 0.94787 0.99048 0.93524 0.86659 0.79795 0.82836 0.78838 1.21227 1.20167 1.19797 1.20626 0.93187 0.88784 1.52035 0.91639 1.18047 0.86914 0.88691 0.87318 1.44156 1.07981 1.75098 1.02102 1.17734 0.93029 0.89512 0.84356 1.20788 0.95984 1.08323 0.95234 1.20775 0.97815 0.98467 0.93281 1.20546 0.92994 1.11447 0.98444 1.20591 0.96025 0.98789 0.94600 1.20442 0.97418 1.12841 0.93471 1.23181 0.99484 1.06222 0.94974 1.23307 0.97137 1.01702 1.03689 0.92855 0.77951 0.85449 0.87661 0.88114 0.87825 0.87600 0.89579 0.91452 0.90993 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.60 12.31 55.43 0.68 -22.92 15 2 C 0.08 2.23 5.37 -17.82 -0.10 2.13 15 3 Si 0.89 21.00 29.55 -169.99 -5.02 15.98 15 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.51 -13.33 7.79 -34.44 -0.27 -13.60 15 8 H 0.07 1.71 7.82 -52.49 -0.41 1.30 15 9 C 0.28 6.57 1.33 -132.97 -0.18 6.40 15 10 N -0.67 -15.51 4.31 -47.06 -0.20 -15.71 15 11 C 0.26 5.92 6.54 -83.79 -0.55 5.38 15 12 C -0.18 -3.99 8.91 -39.38 -0.35 -4.34 15 13 C -0.08 -1.65 10.04 -39.61 -0.40 -2.04 15 14 C -0.21 -3.93 10.04 -39.55 -0.40 -4.32 15 15 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 15 16 C -0.22 -4.49 9.90 -39.38 -0.39 -4.88 15 17 C -0.20 -4.30 10.16 -26.73 -0.27 -4.57 15 18 C -0.22 -4.59 9.57 -26.73 -0.26 -4.85 15 19 H 0.26 6.98 8.32 -40.82 -0.34 6.64 15 20 H 0.39 8.66 8.85 -40.82 -0.36 8.30 15 21 H 0.13 2.93 5.99 -52.48 -0.31 2.62 15 22 H 0.11 1.78 8.06 -52.48 -0.42 1.35 15 23 H 0.10 1.58 8.06 -52.49 -0.42 1.15 15 24 H 0.10 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.11 2.03 8.06 -52.48 -0.42 1.61 15 26 H 0.09 1.85 8.14 -51.93 -0.42 1.43 15 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 29 H 0.08 1.64 8.14 -51.93 -0.42 1.21 15 LS Contribution 252.95 15.07 3.81 3.81 Total: -1.00 -27.22 252.95 -7.88 -35.10 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.60 Total: 10.34 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -3.55 Total: -26.61 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.48 Total: -38.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.22 -7.88 -35.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752031.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.900 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds