Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46691 * 95.39281 * 3 2 1 5 5 H 1.48493 * 109.47633 * 335.39224 * 3 2 1 6 6 H 1.48507 * 109.47158 * 215.38433 * 3 2 1 7 7 C 1.37879 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99866 * 12.16666 * 7 2 1 9 9 C 1.50693 * 119.99963 * 192.16272 * 7 2 1 10 10 C 1.50695 * 112.95879 * 243.59331 * 9 7 2 11 11 C 1.38228 * 120.00424 * 286.20644 * 10 9 7 12 12 C 1.38242 * 120.00284 * 179.78963 * 11 10 9 13 13 C 1.38240 * 119.99704 * 0.43724 * 12 11 10 14 14 C 1.38233 * 119.99797 * 359.81210 * 13 12 11 15 15 C 1.38231 * 120.00297 * 359.97438 * 14 13 12 16 16 C 1.53936 * 113.75569 * 111.95135 * 9 7 2 17 17 C 1.53933 * 86.34201 * 269.40270 * 16 9 7 18 18 N 1.47961 * 113.76135 * 15.24552 * 9 7 2 19 19 H 0.97010 * 120.00040 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.99930 * 359.97438 * 11 10 9 21 21 H 1.08003 * 119.99962 * 180.27802 * 12 11 10 22 22 H 1.07999 * 119.99586 * 179.83603 * 13 12 11 23 23 H 1.07999 * 119.99614 * 179.97438 * 14 13 12 24 24 H 1.07997 * 120.00312 * 179.97438 * 15 14 13 25 25 H 1.08994 * 113.73716 * 23.76218 * 16 9 7 26 26 H 1.08999 * 113.73380 * 154.93820 * 16 9 7 27 27 H 1.08997 * 113.76120 * 90.59564 * 17 16 9 28 28 H 1.09000 * 113.76097 * 221.85434 * 17 16 9 29 29 H 1.00895 * 111.00082 * 202.51548 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6105 1.9806 1.3939 5 1 1.3943 2.6829 -0.5829 6 1 3.4852 1.4757 -0.8108 7 6 2.0045 -1.1941 -0.0005 8 1 1.4827 -2.1188 -0.1981 9 6 3.4861 -1.2088 0.2744 10 6 4.2968 -1.6967 -0.8985 11 6 4.3048 -3.0406 -1.2220 12 6 5.0450 -3.4876 -2.3006 13 6 5.7844 -2.5918 -3.0501 14 6 5.7805 -1.2486 -2.7234 15 6 5.0368 -0.8011 -1.6476 16 6 3.8624 -1.8768 1.6092 17 6 3.7353 -0.4754 2.2332 18 7 3.9945 0.0468 0.8695 19 1 -0.4851 0.8401 0.0004 20 1 3.7303 -3.7411 -0.6339 21 1 5.0476 -4.5369 -2.5561 22 1 6.3648 -2.9413 -3.8912 23 1 6.3585 -0.5489 -3.3088 24 1 5.0341 0.2482 -1.3921 25 1 3.1181 -2.5868 1.9698 26 1 4.8760 -2.2774 1.6290 27 1 2.7365 -0.2501 2.6071 28 1 4.5210 -0.2415 2.9515 29 1 4.9845 0.1504 0.7042 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760106.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = 65.939636 kcal Electronic energy + Delta-G solvation = -13083.399867 eV Core-core repulsion = 10972.618124 eV Total energy + Delta-G solvation = -2110.781743 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.69362 -37.55304 -32.22222 -30.69846 -30.35040 -26.76417 -26.35943 -23.50419 -21.76851 -21.17973 -18.78242 -16.85763 -16.49912 -15.25307 -14.77074 -14.35745 -13.86492 -13.29182 -12.91792 -12.70997 -12.26877 -12.17317 -11.88703 -11.38807 -10.86168 -10.68276 -10.40638 -10.12246 -9.92535 -9.79102 -9.45950 -8.39491 -8.33482 -7.97841 -7.30923 -6.03357 -4.12008 1.98085 2.01806 3.72089 3.75544 3.98181 4.40756 4.75871 4.94185 5.19083 5.40864 5.44350 5.50582 5.66140 5.75626 5.90415 6.12298 6.15984 6.21157 6.47379 6.54250 6.62031 6.76462 6.81586 6.84929 7.03482 7.08709 7.39467 7.57897 7.64720 8.12909 8.46695 8.90016 9.59577 11.03200 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.013872 C = 0.013235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.368967 B = 2017.975013 C = 2115.156486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.998 3.002 4 H -0.299 1.299 5 H -0.352 1.352 6 H -0.289 1.289 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.226 3.774 10 C -0.044 4.044 11 C -0.111 4.111 12 C -0.124 4.124 13 C -0.147 4.147 14 C -0.123 4.123 15 C -0.129 4.129 16 C -0.182 4.182 17 C 0.026 3.974 18 N -0.651 5.651 19 H 0.265 0.735 20 H 0.117 0.883 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.123 0.877 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.033 -3.164 -0.629 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.841 3.159 4 H -0.228 1.228 5 H -0.287 1.287 6 H -0.218 1.218 7 C -0.543 4.543 8 H 0.098 0.902 9 C 0.135 3.865 10 C -0.045 4.045 11 C -0.130 4.130 12 C -0.142 4.142 13 C -0.165 4.165 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.221 4.221 17 C -0.103 4.103 18 N -0.282 5.282 19 H 0.074 0.926 20 H 0.135 0.865 21 H 0.130 0.870 22 H 0.128 0.872 23 H 0.130 0.870 24 H 0.140 0.860 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.276 -2.485 -0.758 10.600 hybrid contribution 1.005 0.076 0.053 1.009 sum 11.281 -2.409 -0.705 11.557 Atomic orbital electron populations 1.69998 1.07203 1.27865 1.47651 1.25204 0.94803 1.01087 0.92056 0.84648 0.75641 0.78181 0.77429 1.22780 1.28745 1.21771 1.20233 0.86797 0.95602 1.51699 0.90190 1.19462 0.95228 0.84664 0.87103 1.20563 0.92699 0.93100 0.98138 1.20867 0.99023 0.95580 0.97522 1.21025 0.98113 0.98948 0.96116 1.20912 1.01450 0.93715 1.00393 1.21014 0.99933 0.95527 0.97608 1.21143 0.97520 0.99976 0.96082 1.24636 0.99824 0.98078 0.99561 1.23385 1.01865 0.93789 0.91244 1.64438 1.19249 1.37474 1.06999 0.92627 0.86482 0.86967 0.87177 0.87048 0.85955 0.91309 0.92259 0.88373 0.92495 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.96 55.43 0.77 -26.75 15 2 C 0.07 2.14 5.44 -17.82 -0.10 2.04 15 3 Si 1.00 26.02 24.45 -169.99 -4.16 21.87 15 4 H -0.30 -7.66 6.96 56.52 0.39 -7.27 15 5 H -0.35 -9.58 7.11 56.52 0.40 -9.18 15 6 H -0.29 -7.23 5.46 56.52 0.31 -6.92 15 7 C -0.51 -14.08 8.92 -34.44 -0.31 -14.39 15 8 H 0.08 2.41 8.06 -52.48 -0.42 1.99 15 9 C 0.23 5.13 0.92 -132.85 -0.12 5.01 15 10 C -0.04 -0.92 4.81 -104.63 -0.50 -1.42 15 11 C -0.11 -2.12 9.44 -39.58 -0.37 -2.50 15 12 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 15 13 C -0.15 -2.31 10.05 -39.58 -0.40 -2.71 15 14 C -0.12 -2.07 10.05 -39.59 -0.40 -2.47 15 15 C -0.13 -2.54 9.03 -39.58 -0.36 -2.89 15 16 C -0.18 -3.56 7.17 -25.79 -0.18 -3.75 15 17 C 0.03 0.52 8.06 -2.57 -0.02 0.50 15 18 N -0.65 -14.03 2.37 -104.96 -0.25 -14.27 15 19 H 0.26 7.76 8.31 -40.82 -0.34 7.42 15 20 H 0.12 2.16 8.06 -52.48 -0.42 1.74 15 21 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 22 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 23 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 24 H 0.12 2.45 5.85 -52.49 -0.31 2.14 15 25 H 0.07 1.37 8.09 -51.93 -0.42 0.95 15 26 H 0.06 1.03 8.09 -51.93 -0.42 0.61 15 27 H 0.10 2.12 8.09 -51.93 -0.42 1.70 15 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 29 H 0.33 6.19 7.52 -39.29 -0.30 5.89 15 LS Contribution 238.62 15.07 3.60 3.60 Total: -1.00 -30.93 238.62 -6.83 -37.77 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.64 Total: 2.82 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -3.16 Total: -25.02 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.52 Total: -41.03 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -4.16 Total: 21.87 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.93 -6.83 -37.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760106.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.705 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds