Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46691 * 95.39281 * 3 2 1 5 5 H 1.48493 * 109.47633 * 335.39224 * 3 2 1 6 6 H 1.48507 * 109.47158 * 215.38433 * 3 2 1 7 7 C 1.37879 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99866 * 12.16666 * 7 2 1 9 9 C 1.50693 * 119.99963 * 192.16272 * 7 2 1 10 10 C 1.50695 * 112.95879 * 243.59331 * 9 7 2 11 11 C 1.38228 * 120.00424 * 286.20644 * 10 9 7 12 12 C 1.38242 * 120.00284 * 179.78963 * 11 10 9 13 13 C 1.38240 * 119.99704 * 0.43724 * 12 11 10 14 14 C 1.38233 * 119.99797 * 359.81210 * 13 12 11 15 15 C 1.38231 * 120.00297 * 359.97438 * 14 13 12 16 16 C 1.53936 * 113.75569 * 111.95135 * 9 7 2 17 17 C 1.53933 * 86.34201 * 269.40270 * 16 9 7 18 18 N 1.47961 * 113.76135 * 15.24552 * 9 7 2 19 19 H 0.97010 * 120.00040 * 359.97438 * 1 2 3 20 20 H 1.08005 * 119.99930 * 359.97438 * 11 10 9 21 21 H 1.08003 * 119.99962 * 180.27802 * 12 11 10 22 22 H 1.07999 * 119.99586 * 179.83603 * 13 12 11 23 23 H 1.07999 * 119.99614 * 179.97438 * 14 13 12 24 24 H 1.07997 * 120.00312 * 179.97438 * 15 14 13 25 25 H 1.08994 * 113.73716 * 23.76218 * 16 9 7 26 26 H 1.08999 * 113.73380 * 154.93820 * 16 9 7 27 27 H 1.08997 * 113.76120 * 90.59564 * 17 16 9 28 28 H 1.09000 * 113.76097 * 221.85434 * 17 16 9 29 29 H 1.00895 * 111.00082 * 202.51548 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6105 1.9806 1.3939 5 1 1.3943 2.6829 -0.5829 6 1 3.4852 1.4757 -0.8108 7 6 2.0045 -1.1941 -0.0005 8 1 1.4827 -2.1188 -0.1981 9 6 3.4861 -1.2088 0.2744 10 6 4.2968 -1.6967 -0.8985 11 6 4.3048 -3.0406 -1.2220 12 6 5.0450 -3.4876 -2.3006 13 6 5.7844 -2.5918 -3.0501 14 6 5.7805 -1.2486 -2.7234 15 6 5.0368 -0.8011 -1.6476 16 6 3.8624 -1.8768 1.6092 17 6 3.7353 -0.4754 2.2332 18 7 3.9945 0.0468 0.8695 19 1 -0.4851 0.8401 0.0004 20 1 3.7303 -3.7411 -0.6339 21 1 5.0476 -4.5369 -2.5561 22 1 6.3648 -2.9413 -3.8912 23 1 6.3585 -0.5489 -3.3088 24 1 5.0341 0.2482 -1.3921 25 1 3.1181 -2.5868 1.9698 26 1 4.8760 -2.2774 1.6290 27 1 2.7365 -0.2501 2.6071 28 1 4.5210 -0.2415 2.9515 29 1 4.9845 0.1504 0.7042 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760106.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = 46.005551 kcal Electronic energy + Delta-G solvation = -13084.264274 eV Core-core repulsion = 10972.618124 eV Total energy + Delta-G solvation = -2111.646150 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.29656 -38.99754 -34.41374 -32.15598 -31.71622 -28.62056 -28.07819 -25.27336 -23.14245 -22.61985 -20.57951 -18.67356 -18.20361 -16.93903 -16.44582 -15.84318 -15.30215 -15.08108 -14.68946 -14.25369 -13.82683 -13.78359 -13.70314 -12.88120 -12.57525 -12.38985 -12.24276 -11.99347 -11.57586 -11.52887 -11.34812 -10.53891 -9.70491 -9.44325 -9.06082 -8.27436 -6.36630 0.61010 0.63484 1.60191 1.65824 1.89669 2.63932 2.96826 3.13714 3.28281 3.87803 4.05760 4.18650 4.26859 4.34482 4.40207 4.64447 4.79337 4.80767 4.92798 5.02639 5.13861 5.19670 5.25904 5.33378 5.60737 5.70364 5.70566 5.92050 6.23696 6.29584 6.46590 6.74725 7.37735 8.82976 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.013872 C = 0.013235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.368967 B = 2017.975013 C = 2115.156486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.021 3.979 3 Si 1.054 2.946 4 H -0.292 1.292 5 H -0.374 1.374 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.039 0.961 9 C 0.214 3.786 10 C -0.071 4.071 11 C -0.129 4.129 12 C -0.121 4.121 13 C -0.136 4.136 14 C -0.121 4.121 15 C -0.146 4.146 16 C -0.164 4.164 17 C 0.028 3.972 18 N -0.664 5.664 19 H 0.263 0.737 20 H 0.110 0.890 21 H 0.143 0.857 22 H 0.150 0.850 23 H 0.142 0.858 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.381 -3.582 -1.382 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.178 4.178 3 Si 0.896 3.104 4 H -0.221 1.221 5 H -0.312 1.312 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.123 3.877 10 C -0.072 4.072 11 C -0.148 4.148 12 C -0.138 4.138 13 C -0.154 4.154 14 C -0.139 4.139 15 C -0.164 4.164 16 C -0.203 4.203 17 C -0.101 4.101 18 N -0.297 5.297 19 H 0.071 0.929 20 H 0.128 0.872 21 H 0.161 0.839 22 H 0.168 0.832 23 H 0.160 0.840 24 H 0.132 0.868 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.671 -2.930 -1.503 14.062 hybrid contribution 0.033 0.054 0.230 0.238 sum 13.705 -2.876 -1.273 14.061 Atomic orbital electron populations 1.70120 1.08809 1.28246 1.51043 1.25974 0.95235 1.04179 0.92424 0.83671 0.74576 0.74354 0.77767 1.22089 1.31175 1.20093 1.20442 0.90095 0.93584 1.49814 0.94304 1.19254 0.92594 0.86362 0.89484 1.20374 0.94444 0.94280 0.98088 1.20985 0.99977 0.94949 0.98889 1.21396 0.96791 1.00870 0.94780 1.21396 1.00375 0.93027 1.00616 1.21379 0.99084 0.96834 0.96608 1.21197 0.98602 0.99369 0.97262 1.24440 1.01037 0.97841 0.96990 1.23394 1.01957 0.93386 0.91354 1.64037 1.20653 1.37044 1.07963 0.92903 0.87150 0.83875 0.83245 0.84038 0.86782 0.92625 0.89142 0.91142 0.88103 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.95 13.96 21.45 0.30 -60.65 15 2 C 0.02 1.24 5.44 84.66 0.46 1.70 15 3 Si 1.05 54.55 24.45 68.60 1.68 56.23 15 4 H -0.29 -14.56 6.96 99.48 0.69 -13.87 15 5 H -0.37 -20.43 7.11 99.48 0.71 -19.73 15 6 H -0.27 -13.17 5.46 99.48 0.54 -12.63 15 7 C -0.50 -28.82 8.92 25.60 0.23 -28.59 15 8 H 0.04 2.48 8.06 -2.91 -0.02 2.46 15 9 C 0.21 9.61 0.92 2.13 0.00 9.61 15 10 C -0.07 -2.87 4.81 -19.87 -0.10 -2.96 15 11 C -0.13 -4.73 9.44 22.27 0.21 -4.52 15 12 C -0.12 -3.53 10.05 22.27 0.22 -3.31 15 13 C -0.14 -3.64 10.05 22.27 0.22 -3.42 15 14 C -0.12 -3.60 10.05 22.27 0.22 -3.37 15 15 C -0.15 -5.39 9.03 22.27 0.20 -5.19 15 16 C -0.16 -6.20 7.17 31.24 0.22 -5.98 15 17 C 0.03 1.04 8.06 86.34 0.70 1.74 15 18 N -0.66 -27.42 2.37 -485.98 -1.15 -28.58 15 19 H 0.26 16.16 8.31 -92.70 -0.77 15.39 15 20 H 0.11 4.06 8.06 -2.91 -0.02 4.03 15 21 H 0.14 3.26 8.06 -2.91 -0.02 3.24 15 22 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 23 H 0.14 3.30 8.06 -2.91 -0.02 3.28 15 24 H 0.11 4.31 5.85 -2.91 -0.02 4.30 15 25 H 0.05 2.21 8.09 -2.39 -0.02 2.20 15 26 H 0.09 2.87 8.09 -2.39 -0.02 2.85 15 27 H 0.07 3.03 8.09 -2.39 -0.02 3.01 15 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 29 H 0.34 12.10 7.52 -89.70 -0.67 11.43 15 Total: -1.00 -69.36 238.62 3.71 -65.65 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.29 Total: 11.65 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 2.60 Total: -44.30 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -0.85 Total: -89.23 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 1.68 Total: 56.23 kcal Total: -69.36 3.71 -65.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760106.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.655 kcal (2) G-P(sol) polarization free energy of solvation -69.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds