Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00319 * 2 1 4 4 H 1.48502 * 109.46991 * 90.78090 * 3 2 1 5 5 H 1.48495 * 109.46967 * 330.78437 * 3 2 1 6 6 H 1.48503 * 109.47071 * 210.77885 * 3 2 1 7 7 C 1.37882 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00327 * 347.50611 * 7 2 1 9 9 C 1.50702 * 119.99711 * 167.50422 * 7 2 1 10 10 C 1.50702 * 112.95495 * 83.64020 * 9 7 2 11 11 C 1.38230 * 119.99993 * 63.12808 * 10 9 7 12 12 C 1.38238 * 120.00050 * 179.81056 * 11 10 9 13 13 C 1.38237 * 119.99622 * 0.39182 * 12 11 10 14 14 C 1.38231 * 120.00206 * 359.85651 * 13 12 11 15 15 C 1.38234 * 119.99734 * 243.39450 * 10 9 7 16 16 C 1.53934 * 113.76053 * 215.28975 * 9 7 2 17 17 C 1.53936 * 86.34381 * 90.59704 * 16 9 7 18 18 N 1.47964 * 113.75903 * 311.85044 * 9 7 2 19 19 H 0.97003 * 119.99698 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.99879 * 359.97438 * 11 10 9 21 21 H 1.08001 * 119.99841 * 180.23361 * 12 11 10 22 22 H 1.08000 * 119.99515 * 179.84172 * 13 12 11 23 23 H 1.07996 * 119.99709 * 179.97438 * 14 13 12 24 24 H 1.08001 * 120.00600 * 359.97438 * 15 10 9 25 25 H 1.09000 * 113.73350 * 204.95727 * 16 9 7 26 26 H 1.09003 * 113.73149 * 336.23838 * 16 9 7 27 27 H 1.08996 * 113.75840 * 138.04043 * 17 16 9 28 28 H 1.08994 * 113.75767 * 269.29549 * 17 16 9 29 29 H 1.00895 * 111.00303 * 23.26469 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5133 2.0368 1.4000 5 1 1.4386 2.6573 -0.6834 6 1 3.5385 1.4448 -0.7165 7 6 2.0045 -1.1942 -0.0005 8 1 1.4836 -2.1184 0.2014 9 6 3.4847 -1.2096 -0.2829 10 6 4.3189 -0.9142 0.9369 11 6 4.2841 -1.7701 2.0218 12 6 5.0523 -1.5012 3.1392 13 6 5.8490 -0.3721 3.1748 14 6 5.8798 0.4865 2.0919 15 6 5.1146 0.2156 0.9730 16 6 3.9531 -2.4468 -1.0699 17 6 3.6943 -1.6153 -2.3393 18 7 3.8720 -0.4261 -1.4769 19 1 -0.4850 0.8401 -0.0004 20 1 3.6588 -2.6503 1.9954 21 1 5.0280 -2.1720 3.9853 22 1 6.4472 -0.1607 4.0488 23 1 6.5020 1.3688 2.1200 24 1 5.1388 0.8864 0.1270 25 1 5.0032 -2.6942 -0.9141 26 1 3.2927 -3.3079 -0.9673 27 1 4.4662 -1.7247 -3.1009 28 1 2.6855 -1.7243 -2.7375 29 1 3.1814 0.2790 -1.6864 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760111.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = 53.580866 kcal Electronic energy + Delta-G solvation = -13138.936293 eV Core-core repulsion = 11027.618633 eV Total energy + Delta-G solvation = -2111.317660 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.03595 -38.91448 -34.55271 -32.12198 -31.64902 -28.53883 -28.35772 -25.09710 -23.14210 -22.54650 -20.38693 -18.70371 -18.15597 -17.27594 -16.17625 -15.76852 -15.73422 -14.96517 -14.89135 -14.27675 -13.75667 -13.72053 -13.19683 -12.76302 -12.66120 -12.43443 -12.15098 -11.94288 -11.60287 -11.49880 -10.91823 -10.72810 -9.67045 -9.60508 -9.29293 -8.44231 -6.48815 0.65636 0.69627 1.28597 1.34469 1.43511 2.23850 2.90987 3.09279 3.46190 3.99624 4.17796 4.27595 4.29822 4.43158 4.51329 4.74372 4.86825 4.89221 4.97819 5.06206 5.11233 5.26195 5.33949 5.41543 5.55396 5.74162 5.81967 5.98569 6.18166 6.31749 6.48886 6.63676 7.17415 8.70609 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.029376 B = 0.016816 C = 0.014268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.920634 B = 1664.657161 C = 1962.000013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.029 3.971 3 Si 0.891 3.109 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.181 1.181 7 C -0.517 4.517 8 H 0.042 0.958 9 C 0.189 3.811 10 C -0.054 4.054 11 C -0.128 4.128 12 C -0.126 4.126 13 C -0.139 4.139 14 C -0.132 4.132 15 C -0.142 4.142 16 C -0.122 4.122 17 C 0.014 3.986 18 N -0.642 5.642 19 H 0.267 0.733 20 H 0.109 0.891 21 H 0.143 0.857 22 H 0.149 0.851 23 H 0.140 0.860 24 H 0.120 0.880 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.715 -0.259 1.898 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.171 4.171 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.104 1.104 7 C -0.556 4.556 8 H 0.061 0.939 9 C 0.097 3.903 10 C -0.055 4.055 11 C -0.147 4.147 12 C -0.144 4.144 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.116 4.116 18 N -0.270 5.270 19 H 0.076 0.924 20 H 0.127 0.873 21 H 0.160 0.840 22 H 0.166 0.834 23 H 0.158 0.842 24 H 0.138 0.862 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.394 0.002 1.915 12.541 hybrid contribution -1.665 0.547 0.046 1.753 sum 10.729 0.549 1.961 10.921 Atomic orbital electron populations 1.70048 1.08051 1.28183 1.50709 1.25647 0.95253 1.02495 0.93705 0.86969 0.82652 0.79232 0.79492 1.21227 1.21889 1.10379 1.21048 0.91196 0.93925 1.49396 0.93949 1.19293 0.91188 0.92242 0.87558 1.20136 0.94549 0.94736 0.96044 1.20992 0.99639 1.00176 0.93885 1.21375 0.96747 0.98412 0.97828 1.21370 1.00312 0.94872 0.99140 1.21432 0.99570 1.00412 0.93593 1.21319 0.97685 0.97799 0.99199 1.23264 1.00489 0.96417 0.95839 1.23377 1.00246 0.92055 0.95947 1.67554 1.47546 1.07308 1.04620 0.92366 0.87257 0.83963 0.83369 0.84228 0.86211 0.89659 0.92328 0.88292 0.92944 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.96 21.45 0.30 -56.87 15 2 C 0.03 1.65 5.31 84.66 0.45 2.10 15 3 Si 0.89 42.70 23.88 68.60 1.64 44.33 15 4 H -0.29 -14.15 7.11 99.48 0.71 -13.45 15 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 6 H -0.18 -7.77 3.43 99.48 0.34 -7.43 15 7 C -0.52 -28.60 8.61 25.60 0.22 -28.38 15 8 H 0.04 2.61 8.06 -2.91 -0.02 2.59 15 9 C 0.19 8.61 0.54 2.14 0.00 8.61 15 10 C -0.05 -2.30 4.24 -19.87 -0.08 -2.38 15 11 C -0.13 -5.07 9.47 22.27 0.21 -4.86 15 12 C -0.13 -4.05 10.05 22.27 0.22 -3.83 15 13 C -0.14 -4.12 10.05 22.27 0.22 -3.89 15 14 C -0.13 -4.31 10.05 22.27 0.22 -4.09 15 15 C -0.14 -5.60 7.69 22.27 0.17 -5.43 15 16 C -0.12 -4.82 7.36 31.24 0.23 -4.59 15 17 C 0.01 0.51 8.63 86.41 0.75 1.26 15 18 N -0.64 -27.31 5.99 -489.01 -2.93 -30.24 15 19 H 0.27 15.49 8.31 -92.71 -0.77 14.72 15 20 H 0.11 4.36 8.06 -2.91 -0.02 4.34 15 21 H 0.14 3.62 8.06 -2.91 -0.02 3.60 15 22 H 0.15 3.22 8.06 -2.91 -0.02 3.20 15 23 H 0.14 3.63 8.06 -2.91 -0.02 3.61 15 24 H 0.12 4.78 5.74 -2.91 -0.02 4.76 15 25 H 0.08 3.05 8.09 -2.39 -0.02 3.03 15 26 H 0.06 2.33 8.09 -2.39 -0.02 2.31 15 27 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 29 H 0.31 13.67 4.57 -89.70 -0.41 13.26 15 Total: -1.00 -63.79 234.84 1.99 -61.80 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.36 Total: 26.47 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 2.62 Total: -45.49 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.63 Total: -87.11 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.64 Total: 44.33 kcal Total: -63.79 1.99 -61.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760111.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.384 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds