Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99969 * 2 1 4 4 H 1.48498 * 109.46875 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47222 * 120.00202 * 3 2 1 6 6 H 1.48509 * 109.46752 * 240.00052 * 3 2 1 7 7 C 1.37875 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00342 * 174.71868 * 7 2 1 9 9 C 1.50697 * 120.00292 * 354.72143 * 7 2 1 10 10 C 1.50700 * 112.84906 * 296.20605 * 9 7 2 11 11 C 1.38226 * 119.61575 * 286.70253 * 10 9 7 12 12 C 1.38631 * 119.16175 * 179.97438 * 11 10 9 13 13 C 1.38674 * 118.41907 * 0.02562 * 12 11 10 14 14 C 1.38180 * 119.16472 * 359.97438 * 13 12 11 15 15 N 1.31854 * 119.61926 * 106.43273 * 10 9 7 16 16 C 1.53783 * 113.62073 * 165.00672 * 9 7 2 17 17 C 1.54049 * 86.98504 * 270.84201 * 16 9 7 18 18 C 1.53784 * 113.61478 * 67.39594 * 9 7 2 19 19 H 0.97004 * 119.99821 * 174.62845 * 1 2 3 20 20 H 1.07999 * 120.42065 * 0.02562 * 11 10 9 21 21 H 1.07996 * 120.79250 * 180.02562 * 12 11 10 22 22 H 1.08001 * 120.42181 * 180.02562 * 13 12 11 23 23 H 1.07994 * 119.62082 * 180.02562 * 14 13 12 24 24 H 1.09002 * 113.61177 * 25.42962 * 16 9 7 25 25 H 1.09000 * 113.61646 * 156.33603 * 16 9 7 26 26 H 1.09007 * 113.61727 * 220.01910 * 17 16 9 27 27 H 1.08995 * 113.61741 * 89.11408 * 17 16 9 28 28 H 1.09001 * 113.61652 * 203.66840 * 18 9 7 29 29 H 1.08996 * 113.61656 * 334.57467 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0810 -1.1961 -0.0856 9 6 1.2559 -2.4963 0.1212 10 6 0.5344 -2.6369 1.4368 11 6 1.2569 -2.8841 2.5890 12 6 0.5837 -3.0112 3.7942 13 6 -0.7972 -2.8848 3.7953 14 6 -1.4518 -2.6377 2.6038 15 7 -0.7781 -2.5173 1.4763 16 6 2.0969 -3.7277 -0.2548 17 6 1.6080 -3.5190 -1.7006 18 6 0.3782 -2.8178 -1.1000 19 1 -0.4850 -0.8364 -0.0786 20 1 2.3323 -2.9762 2.5510 21 1 1.1219 -3.2040 4.7104 22 1 -1.3541 -2.9776 4.7160 23 1 -2.5270 -2.5375 2.5962 24 1 3.1694 -3.5787 -0.1293 25 1 1.7415 -4.6537 0.1970 26 1 1.3709 -4.4477 -2.2198 27 1 2.2458 -2.8567 -2.2860 28 1 -0.4464 -3.4956 -0.8789 29 1 0.0639 -1.9348 -1.6564 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260838418.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = 47.724274 kcal Electronic energy + Delta-G solvation = -13135.636007 eV Core-core repulsion = 11024.064386 eV Total energy + Delta-G solvation = -2111.571621 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.62357 -37.36544 -32.26690 -31.55987 -30.37612 -25.92246 -24.59720 -23.52879 -22.37508 -21.22010 -18.58124 -16.82273 -15.95784 -15.22025 -14.81573 -13.92264 -13.67977 -13.36586 -12.95826 -12.55960 -12.32354 -11.79616 -11.23795 -11.10880 -10.80675 -10.29372 -10.04168 -9.99941 -9.61049 -9.15187 -9.04346 -8.77073 -8.48763 -8.18412 -7.86371 -6.23165 -4.05506 2.01794 2.12152 3.44892 3.46174 3.65022 4.55417 4.72942 5.15915 5.43602 5.44649 5.60226 5.78486 5.79735 5.94070 6.01719 6.07139 6.29591 6.49712 6.50292 6.67497 6.70123 6.82178 6.91793 7.02141 7.20082 7.36884 7.55467 7.72011 8.26174 8.45149 8.93628 9.07160 9.70528 11.16549 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.015987 C = 0.012516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.533645 B = 1751.014313 C = 2236.665254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.029 3.971 3 Si 1.059 2.941 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.584 4.584 8 H 0.055 0.945 9 C 0.090 3.910 10 C 0.187 3.813 11 C -0.169 4.169 12 C -0.087 4.087 13 C -0.210 4.210 14 C 0.094 3.906 15 N -0.475 5.475 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.127 4.127 19 H 0.297 0.703 20 H 0.124 0.876 21 H 0.119 0.881 22 H 0.118 0.882 23 H 0.140 0.860 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -5.638 3.860 6.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.180 4.180 3 Si 0.888 3.112 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.622 4.622 8 H 0.074 0.926 9 C 0.089 3.911 10 C 0.049 3.951 11 C -0.190 4.190 12 C -0.113 4.113 13 C -0.230 4.230 14 C -0.064 4.064 15 N -0.183 5.183 16 C -0.166 4.166 17 C -0.166 4.166 18 C -0.165 4.165 19 H 0.112 0.888 20 H 0.142 0.858 21 H 0.137 0.863 22 H 0.136 0.864 23 H 0.158 0.842 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.312 -3.822 3.158 4.968 hybrid contribution 0.626 -1.682 1.009 2.059 sum 0.938 -5.504 4.167 6.967 Atomic orbital electron populations 1.70572 1.06797 1.33868 1.41956 1.25688 0.96645 1.02089 0.93623 0.83706 0.75054 0.75964 0.76492 1.20858 1.21592 1.21370 1.21402 0.93850 0.89782 1.57175 0.92634 1.18523 0.92186 0.94446 0.85937 1.22216 0.88574 0.87015 0.97292 1.21826 1.01074 1.02921 0.93134 1.21393 0.94428 0.97711 0.97738 1.21822 0.95300 1.06635 0.99240 1.22642 0.99745 0.95438 0.88532 1.67592 1.09587 1.12299 1.28851 1.22960 0.99330 0.97372 0.96943 1.22649 0.99551 0.98768 0.95669 1.22907 0.95132 0.99176 0.99282 0.88828 0.85764 0.86276 0.86364 0.84229 0.92389 0.92632 0.93823 0.90486 0.92550 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.12 55.43 0.73 -26.31 15 2 C 0.03 0.81 5.23 -17.82 -0.09 0.71 15 3 Si 1.06 25.13 29.91 -169.99 -5.08 20.05 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.58 -15.95 8.00 -34.44 -0.28 -16.22 15 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 15 9 C 0.09 2.23 0.45 -156.00 -0.07 2.16 15 10 C 0.19 4.50 5.04 -82.59 -0.42 4.08 15 11 C -0.17 -3.62 9.46 -39.44 -0.37 -4.00 15 12 C -0.09 -1.59 10.18 -39.28 -0.40 -1.99 15 13 C -0.21 -3.73 10.11 -39.44 -0.40 -4.13 15 14 C 0.09 1.89 11.18 -17.55 -0.20 1.69 15 15 N -0.47 -11.36 8.01 -9.47 -0.08 -11.44 15 16 C -0.13 -2.71 6.97 -25.78 -0.18 -2.89 15 17 C -0.13 -2.67 7.81 -25.77 -0.20 -2.88 15 18 C -0.13 -3.03 5.76 -25.91 -0.15 -3.17 15 19 H 0.30 8.87 4.22 -40.82 -0.17 8.69 15 20 H 0.12 2.50 8.06 -52.49 -0.42 2.08 15 21 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 22 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 23 H 0.14 2.37 8.06 -52.49 -0.42 1.95 15 24 H 0.06 1.18 8.09 -51.93 -0.42 0.76 15 25 H 0.06 1.09 8.09 -51.93 -0.42 0.67 15 26 H 0.04 0.79 8.14 -51.92 -0.42 0.36 15 27 H 0.08 1.62 8.14 -51.93 -0.42 1.20 15 28 H 0.06 1.31 7.81 -51.93 -0.41 0.90 15 29 H 0.06 1.70 7.06 -51.93 -0.37 1.33 15 LS Contribution 244.14 15.07 3.68 3.68 Total: -1.00 -30.70 244.14 -7.03 -37.74 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.53 Total: 2.91 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -2.75 Total: -26.62 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.65 Total: -37.75 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.70 -7.03 -37.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838418.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.462 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds