Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.35458 * 126.42090 * 84.68372 * 10 9 7 12 12 N 1.33339 * 108.60692 * 179.89232 * 11 10 9 13 13 C 1.32306 * 109.13925 * 0.37968 * 12 11 10 14 14 C 1.40913 * 133.24516 * 179.73887 * 13 12 11 15 15 N 1.31137 * 119.70478 * 180.02562 * 14 13 12 16 16 C 1.33515 * 121.37129 * 0.02562 * 15 14 13 17 17 C 1.35001 * 121.25044 * 359.97438 * 16 15 14 18 18 N 1.36044 * 126.41571 * 265.00149 * 10 9 7 19 19 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 20 20 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 21 21 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 22 22 H 1.07999 * 125.69513 * 0.02562 * 11 10 9 23 23 H 1.08001 * 120.14734 * 0.05353 * 14 13 12 24 24 H 1.07994 * 119.37961 * 180.02562 * 16 15 14 25 25 H 1.08004 * 120.12949 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.8337 -4.1928 1.0697 12 7 3.6265 -5.1829 0.6586 13 6 3.5534 -5.2785 -0.6590 14 6 4.1693 -6.1263 -1.6011 15 7 3.8990 -5.9854 -2.8766 16 6 3.0484 -5.0508 -3.3077 17 6 2.4322 -4.2137 -2.4463 18 7 2.6784 -4.3181 -1.1059 19 1 -0.4849 0.8401 0.0041 20 1 0.6280 -2.5591 0.8866 21 1 0.6206 -2.5548 -0.8933 22 1 2.6942 -3.8813 2.0944 23 1 4.8605 -6.8890 -1.2742 24 1 2.8490 -4.9634 -4.3654 25 1 1.7471 -3.4645 -2.8149 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966305.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = 72.707987 kcal Electronic energy + Delta-G solvation = -12291.022094 eV Core-core repulsion = 10076.993504 eV Total energy + Delta-G solvation = -2214.028589 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.99815 -39.38913 -35.76890 -34.99668 -32.50282 -31.26290 -28.88937 -25.87609 -24.94839 -23.76787 -22.14161 -19.03567 -18.63290 -18.27578 -17.03407 -16.69237 -16.35553 -15.95944 -14.90119 -14.52770 -14.42520 -13.90858 -13.65491 -13.47386 -12.79242 -12.68484 -12.53499 -12.08557 -11.67328 -11.24634 -10.99619 -10.66468 -9.90754 -8.95760 -8.26001 -6.42169 -0.42113 0.26324 1.38804 1.40127 1.48177 1.53311 1.86573 2.37154 2.58934 3.04023 3.11239 3.34182 3.46216 3.88572 4.22099 4.36306 4.48781 4.57534 4.78206 5.16214 5.27568 5.49659 5.55962 5.62760 5.85191 6.04266 6.61528 6.66342 6.78576 7.27632 8.80497 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.046283 B = 0.009303 C = 0.008688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.829389 B = 3008.934599 C = 3222.013475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.100 3.900 10 C -0.013 4.013 11 C 0.008 3.992 12 N -0.483 5.483 13 C 0.120 3.880 14 C 0.195 3.805 15 N -0.472 5.472 16 C 0.033 3.967 17 C 0.004 3.996 18 N -0.358 5.358 19 H 0.269 0.731 20 H 0.033 0.967 21 H 0.011 0.989 22 H 0.195 0.805 23 H 0.217 0.783 24 H 0.213 0.787 25 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 -7.498 -4.837 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.062 3.938 10 C -0.130 4.130 11 C -0.143 4.143 12 N -0.206 5.206 13 C -0.124 4.124 14 C 0.012 3.988 15 N -0.184 5.184 16 C -0.104 4.104 17 C -0.120 4.120 18 N -0.032 5.032 19 H 0.078 0.922 20 H 0.051 0.949 21 H 0.030 0.970 22 H 0.211 0.789 23 H 0.234 0.766 24 H 0.230 0.770 25 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.444 -8.283 -5.143 11.166 hybrid contribution -0.882 2.179 0.333 2.374 sum 4.561 -6.104 -4.810 9.011 Atomic orbital electron populations 1.70026 1.07399 1.28384 1.50246 1.25771 0.95686 1.02652 0.94124 0.85540 0.78380 0.78383 0.79024 1.19691 1.20253 1.19398 1.21208 0.92784 0.91008 1.52440 0.93375 1.17541 0.91040 0.87714 0.97526 1.22182 1.05521 1.00151 0.85153 1.22629 0.96963 0.94916 0.99808 1.70406 1.22882 1.20387 1.06922 1.22587 0.99800 0.97228 0.92756 1.23224 0.95396 0.95028 0.85112 1.68226 1.15026 1.19957 1.15178 1.22644 0.94480 0.91585 1.01698 1.23045 1.04287 1.04006 0.80627 1.42850 1.29475 1.23945 1.06944 0.92191 0.94867 0.97036 0.78858 0.76629 0.77021 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.16 13.29 21.45 0.28 -51.88 15 2 C 0.02 0.94 5.46 84.66 0.46 1.41 15 3 Si 0.96 42.42 29.54 68.60 2.03 44.44 15 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 7 C -0.54 -29.13 9.09 25.60 0.23 -28.90 15 8 H 0.05 2.65 7.74 -2.91 -0.02 2.62 15 9 C 0.10 5.02 5.44 29.10 0.16 5.18 15 10 C -0.01 -0.57 6.24 41.26 0.26 -0.31 15 11 C 0.01 0.35 11.76 83.82 0.99 1.33 15 12 N -0.48 -19.11 11.30 -194.16 -2.19 -21.31 15 13 C 0.12 4.40 7.85 134.07 1.05 5.45 15 14 C 0.20 5.52 11.34 85.45 0.97 6.49 15 15 N -0.47 -12.99 10.42 -195.45 -2.04 -15.03 15 16 C 0.03 0.87 11.07 83.69 0.93 1.80 15 17 C 0.00 0.13 10.97 83.19 0.91 1.04 15 18 N -0.36 -14.11 2.95 -338.95 -1.00 -15.11 15 19 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 20 H 0.03 1.74 8.14 -2.38 -0.02 1.72 15 21 H 0.01 0.60 8.14 -2.39 -0.02 0.58 15 22 H 0.19 7.12 8.06 -2.91 -0.02 7.10 15 23 H 0.22 4.33 8.06 -2.91 -0.02 4.30 15 24 H 0.21 3.66 8.06 -2.91 -0.02 3.64 15 25 H 0.17 5.37 8.06 -2.91 -0.02 5.35 15 Total: -1.00 -63.74 232.59 4.23 -59.51 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.20 Total: 5.88 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.96 Total: -6.51 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -4.95 Total: -103.33 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -63.74 4.23 -59.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966305.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.217 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds