Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38279 * 119.92331 * 2 1 4 4 C 1.38257 * 119.82980 * 179.71629 * 3 2 1 5 5 C 1.37875 * 120.23222 * 0.24134 * 4 3 2 6 6 C 1.39626 * 120.28008 * 359.97438 * 5 4 3 7 7 C 1.38129 * 119.92351 * 180.17777 * 2 1 3 8 8 C 1.51215 * 130.99102 * 359.97438 * 7 2 1 9 9 C 1.53748 * 104.53858 * 180.27656 * 8 7 2 10 10 H 1.09004 * 110.29688 * 118.92874 * 9 8 7 11 11 C 1.50703 * 110.30085 * 240.97226 * 9 8 7 12 12 H 1.07998 * 119.99851 * 25.21280 * 11 9 8 13 13 C 1.37877 * 120.00096 * 205.21234 * 11 9 8 14 14 N 1.31505 * 119.99906 * 177.74110 * 13 11 9 15 15 Si 1.86796 * 119.99763 * 357.74055 * 13 11 9 16 16 H 1.48503 * 109.47336 * 84.92298 * 15 13 11 17 17 H 1.48499 * 109.46973 * 204.91814 * 15 13 11 18 18 H 1.48497 * 109.47457 * 324.92098 * 15 13 11 19 19 N 1.39576 * 129.33035 * 180.02562 * 6 5 4 20 20 H 1.09005 * 109.47032 * 269.81890 * 1 2 3 21 21 H 1.09002 * 109.47262 * 29.81683 * 1 2 3 22 22 H 1.08998 * 109.46994 * 149.82562 * 1 2 3 23 23 H 1.08002 * 120.08348 * 359.93193 * 3 2 1 24 24 H 1.07997 * 119.87873 * 180.26651 * 4 3 2 25 25 H 1.07996 * 119.85389 * 180.02562 * 5 4 3 26 26 H 1.08999 * 110.42157 * 299.04626 * 8 7 2 27 27 H 1.09006 * 110.42207 * 61.51499 * 8 7 2 28 28 H 0.97006 * 120.00098 * 179.97438 * 14 13 11 29 29 H 0.97001 * 124.95090 * 0.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5794 1.1962 0.0059 5 6 4.2717 0.0038 0.0068 6 6 3.5824 -1.2104 0.0023 7 6 2.1961 -1.1971 -0.0037 8 6 1.7017 -2.6262 -0.0076 9 6 2.9819 -3.4776 -0.0034 10 1 3.0192 -4.0999 0.8907 11 6 3.0426 -4.3366 -1.2401 12 1 2.5195 -4.0328 -2.1348 13 6 3.7661 -5.5102 -1.2295 14 7 3.7829 -6.2820 -2.2941 15 14 4.7225 -6.0040 0.2973 16 1 3.8204 -6.7162 1.2376 17 1 5.8424 -6.8996 -0.0883 18 1 5.2648 -4.7888 0.9562 19 7 4.0846 -2.5127 0.0028 20 1 -0.3633 -0.0032 1.0277 21 1 -0.3634 0.8916 -0.5110 22 1 -0.3633 -0.8884 -0.5165 23 1 1.6569 2.1338 -0.0011 24 1 4.1189 2.1318 0.0103 25 1 5.3516 0.0092 0.0119 26 1 1.1090 -2.8260 0.8850 27 1 1.1165 -2.8237 -0.9059 28 1 4.2922 -7.1075 -2.2868 29 1 5.0264 -2.7451 0.0069 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = 20.082783 kcal Electronic energy + Delta-G solvation = -12675.448699 eV Core-core repulsion = 10562.678454 eV Total energy + Delta-G solvation = -2112.770246 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57465 -35.89526 -32.71451 -32.34121 -29.01256 -28.87130 -26.17559 -24.78607 -20.84319 -20.69364 -19.97770 -17.20136 -16.32427 -14.99887 -14.90116 -14.44394 -13.78739 -13.37889 -12.87108 -12.70824 -12.54511 -11.85552 -11.74822 -11.57352 -11.29020 -11.09582 -10.86068 -10.39730 -10.14926 -10.06483 -9.76603 -8.97931 -8.81545 -7.94132 -6.37463 -6.28394 -4.33215 2.03687 2.31741 3.13887 3.23163 3.23805 4.21994 4.36633 4.49698 5.22514 5.33355 5.44212 5.67691 5.75622 5.86656 5.94985 6.06015 6.19378 6.21532 6.27092 6.39490 6.65306 6.80946 6.91019 7.10511 7.18304 7.34944 7.46504 7.59711 8.15740 8.33209 8.77879 8.86157 9.33185 10.83487 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.048509 B = 0.010080 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.079186 B = 2777.003824 C = 3062.743701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.075 4.075 5 C -0.213 4.213 6 C 0.218 3.782 7 C -0.176 4.176 8 C -0.065 4.065 9 C 0.229 3.771 10 H 0.037 0.963 11 C -0.519 4.519 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.885 5.885 15 Si 0.881 3.119 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.266 1.266 19 N -0.727 5.727 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.267 0.733 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 9.874 5.980 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.034 4.034 3 C -0.223 4.223 4 C -0.093 4.093 5 C -0.237 4.237 6 C 0.108 3.892 7 C -0.181 4.181 8 C -0.103 4.103 9 C 0.128 3.872 10 H 0.054 0.946 11 C -0.558 4.558 12 H 0.096 0.904 13 C -0.128 4.128 14 N -0.522 5.522 15 Si 0.708 3.292 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.191 1.191 19 N -0.354 5.354 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.124 0.876 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.111 9.446 5.900 11.336 hybrid contribution 1.169 -0.471 0.603 1.397 sum -0.942 8.975 6.503 11.123 Atomic orbital electron populations 1.20729 0.92248 1.02184 1.01588 1.19070 0.94957 0.91611 0.97797 1.20439 0.93938 0.96349 1.11581 1.20527 0.94068 0.96391 0.98347 1.20221 0.98685 0.90760 1.14051 1.18628 0.92998 0.86727 0.90828 1.19924 0.93089 0.94861 1.10245 1.21007 0.98274 0.89667 1.01354 1.19484 0.83021 0.87878 0.96814 0.94563 1.21383 1.32014 1.04009 0.98414 0.90354 1.25170 0.95494 0.96038 0.96139 1.69903 1.40620 1.12909 1.28747 0.86841 0.80118 0.78907 0.83369 1.19849 1.21243 1.19108 1.46587 1.08623 1.02374 1.77806 0.91798 0.92227 0.91635 0.87306 0.87210 0.87603 0.92044 0.90154 0.92258 0.76844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.88 36.01 0.36 -1.20 15 2 C -0.03 -0.59 5.88 -104.64 -0.61 -1.20 15 3 C -0.20 -3.28 9.71 -39.56 -0.38 -3.67 15 4 C -0.07 -1.21 10.02 -39.71 -0.40 -1.61 15 5 C -0.21 -3.90 10.07 -39.20 -0.39 -4.29 15 6 C 0.22 4.53 7.03 -83.67 -0.59 3.94 15 7 C -0.18 -3.55 6.07 -104.26 -0.63 -4.18 15 8 C -0.07 -1.36 5.97 -27.24 -0.16 -1.52 15 9 C 0.23 5.35 3.00 -68.68 -0.21 5.15 15 10 H 0.04 0.85 6.12 -51.93 -0.32 0.53 15 11 C -0.52 -14.17 9.15 -34.44 -0.32 -14.48 15 12 H 0.08 2.36 7.84 -52.49 -0.41 1.95 15 13 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 14 N -0.89 -26.06 13.96 55.43 0.77 -25.29 15 15 Si 0.88 20.48 26.84 -169.99 -4.56 15.92 15 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 18 H -0.27 -5.87 6.56 56.52 0.37 -5.50 15 19 N -0.73 -16.06 6.05 -52.79 -0.32 -16.38 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.06 0.72 8.08 -51.93 -0.42 0.30 15 22 H 0.06 0.93 7.71 -51.93 -0.40 0.53 15 23 H 0.11 1.48 8.06 -52.49 -0.42 1.05 15 24 H 0.11 1.45 8.06 -52.49 -0.42 1.03 15 25 H 0.11 1.75 8.06 -52.49 -0.42 1.32 15 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 27 H 0.08 1.71 7.56 -51.93 -0.39 1.32 15 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 29 H 0.39 8.34 8.41 -40.82 -0.34 8.00 15 LS Contribution 244.35 15.07 3.68 3.68 Total: -1.00 -29.16 244.35 -7.43 -36.59 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.56 Total: 6.52 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.44 Total: -21.05 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.45 Total: -41.66 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.56 Total: 15.92 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.16 -7.43 -36.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.671 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds