Wall clock time and date at job start Mon Mar 30 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38279 * 119.92331 * 2 1 4 4 C 1.38257 * 119.82980 * 179.71629 * 3 2 1 5 5 C 1.37875 * 120.23222 * 0.24134 * 4 3 2 6 6 C 1.39626 * 120.28008 * 359.97438 * 5 4 3 7 7 C 1.38129 * 119.92351 * 180.17777 * 2 1 3 8 8 C 1.51215 * 130.99102 * 359.97438 * 7 2 1 9 9 C 1.53748 * 104.53858 * 180.27656 * 8 7 2 10 10 H 1.09004 * 110.29688 * 118.92874 * 9 8 7 11 11 C 1.50703 * 110.30085 * 240.97226 * 9 8 7 12 12 H 1.07998 * 119.99851 * 25.21280 * 11 9 8 13 13 C 1.37877 * 120.00096 * 205.21234 * 11 9 8 14 14 N 1.31505 * 119.99906 * 177.74110 * 13 11 9 15 15 Si 1.86796 * 119.99763 * 357.74055 * 13 11 9 16 16 H 1.48503 * 109.47336 * 84.92298 * 15 13 11 17 17 H 1.48499 * 109.46973 * 204.91814 * 15 13 11 18 18 H 1.48497 * 109.47457 * 324.92098 * 15 13 11 19 19 N 1.39576 * 129.33035 * 180.02562 * 6 5 4 20 20 H 1.09005 * 109.47032 * 269.81890 * 1 2 3 21 21 H 1.09002 * 109.47262 * 29.81683 * 1 2 3 22 22 H 1.08998 * 109.46994 * 149.82562 * 1 2 3 23 23 H 1.08002 * 120.08348 * 359.93193 * 3 2 1 24 24 H 1.07997 * 119.87873 * 180.26651 * 4 3 2 25 25 H 1.07996 * 119.85389 * 180.02562 * 5 4 3 26 26 H 1.08999 * 110.42157 * 299.04626 * 8 7 2 27 27 H 1.09006 * 110.42207 * 61.51499 * 8 7 2 28 28 H 0.97006 * 120.00098 * 179.97438 * 14 13 11 29 29 H 0.97001 * 124.95090 * 0.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5794 1.1962 0.0059 5 6 4.2717 0.0038 0.0068 6 6 3.5824 -1.2104 0.0023 7 6 2.1961 -1.1971 -0.0037 8 6 1.7017 -2.6262 -0.0076 9 6 2.9819 -3.4776 -0.0034 10 1 3.0192 -4.0999 0.8907 11 6 3.0426 -4.3366 -1.2401 12 1 2.5195 -4.0328 -2.1348 13 6 3.7661 -5.5102 -1.2295 14 7 3.7829 -6.2820 -2.2941 15 14 4.7225 -6.0040 0.2973 16 1 3.8204 -6.7162 1.2376 17 1 5.8424 -6.8996 -0.0883 18 1 5.2648 -4.7888 0.9562 19 7 4.0846 -2.5127 0.0028 20 1 -0.3633 -0.0032 1.0277 21 1 -0.3634 0.8916 -0.5110 22 1 -0.3633 -0.8884 -0.5165 23 1 1.6569 2.1338 -0.0011 24 1 4.1189 2.1318 0.0103 25 1 5.3516 0.0092 0.0119 26 1 1.1090 -2.8260 0.8850 27 1 1.1165 -2.8237 -0.9059 28 1 4.2922 -7.1075 -2.2868 29 1 5.0264 -2.7451 0.0069 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:39 Heat of formation + Delta-G solvation = 1.782535 kcal Electronic energy + Delta-G solvation = -12676.242258 eV Core-core repulsion = 10562.678454 eV Total energy + Delta-G solvation = -2113.563804 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.06779 -37.44092 -34.64168 -33.81998 -30.69520 -30.40022 -27.57459 -26.52125 -22.39781 -22.25880 -21.52162 -19.26443 -17.85796 -16.60848 -16.36520 -16.12877 -15.33218 -14.79049 -14.77741 -14.16666 -13.97076 -13.34062 -13.16026 -13.01374 -12.85532 -12.80385 -12.28287 -12.14191 -11.87444 -11.71059 -11.50414 -10.90749 -10.61320 -9.30629 -8.40713 -7.96453 -6.51482 0.65936 0.91409 1.30862 1.31492 1.42985 2.25207 2.65011 3.08749 3.26806 3.93459 4.15174 4.29855 4.32355 4.49040 4.62273 4.70657 4.84389 4.91903 4.93399 5.07558 5.10711 5.28785 5.41215 5.49436 5.71556 5.80912 5.95608 6.16391 6.20315 6.54331 6.63438 7.14071 7.28681 8.75435 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.048509 B = 0.010080 C = 0.009140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.079186 B = 2777.003824 C = 3062.743701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.040 4.040 3 C -0.195 4.195 4 C -0.071 4.071 5 C -0.220 4.220 6 C 0.185 3.815 7 C -0.202 4.202 8 C -0.062 4.062 9 C 0.232 3.768 10 H 0.041 0.959 11 C -0.528 4.528 12 H 0.029 0.971 13 C 0.021 3.979 14 N -0.937 5.937 15 Si 0.951 3.049 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.247 1.247 19 N -0.739 5.739 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.055 0.945 23 H 0.144 0.856 24 H 0.147 0.853 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.270 0.730 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 12.291 7.895 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.041 4.041 3 C -0.215 4.215 4 C -0.090 4.090 5 C -0.243 4.243 6 C 0.078 3.922 7 C -0.207 4.207 8 C -0.100 4.100 9 C 0.130 3.870 10 H 0.059 0.941 11 C -0.567 4.567 12 H 0.047 0.953 13 C -0.179 4.179 14 N -0.576 5.576 15 Si 0.774 3.226 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.170 1.170 19 N -0.368 5.368 20 H 0.100 0.900 21 H 0.102 0.898 22 H 0.074 0.926 23 H 0.162 0.838 24 H 0.165 0.835 25 H 0.137 0.863 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.044 11.920 7.820 14.402 hybrid contribution 1.058 -1.037 -0.069 1.482 sum -0.986 10.883 7.751 13.398 Atomic orbital electron populations 1.20786 0.89960 1.02955 1.02921 1.19521 0.96865 0.91106 0.96622 1.20936 0.94250 0.97169 1.09164 1.21001 0.94487 0.97050 0.96446 1.20533 0.99662 0.90550 1.13547 1.18940 0.93663 0.86836 0.92756 1.20081 0.93256 0.95150 1.12191 1.20881 0.97129 0.90515 1.01425 1.19302 0.84812 0.88207 0.94690 0.94140 1.21539 1.31513 1.05183 0.98423 0.95253 1.26050 0.96467 0.95797 0.99568 1.70053 1.42325 1.13770 1.31448 0.85706 0.78563 0.79138 0.79155 1.18752 1.21117 1.17029 1.46131 1.08119 1.02886 1.79693 0.90046 0.89841 0.92561 0.83797 0.83500 0.86278 0.90020 0.92002 0.92083 0.76687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.76 9.88 71.24 0.70 -2.05 15 2 C -0.04 -1.31 5.88 -19.88 -0.12 -1.42 15 3 C -0.20 -5.49 9.71 22.28 0.22 -5.27 15 4 C -0.07 -2.03 10.02 22.19 0.22 -1.81 15 5 C -0.22 -7.51 10.07 22.52 0.23 -7.28 15 6 C 0.18 7.53 7.03 38.34 0.27 7.80 15 7 C -0.20 -7.96 6.07 -19.63 -0.12 -8.08 15 8 C -0.06 -2.61 5.97 30.26 0.18 -2.43 15 9 C 0.23 11.00 3.00 44.49 0.13 11.14 15 10 H 0.04 1.87 6.12 -2.38 -0.01 1.85 15 11 C -0.53 -30.07 9.15 25.60 0.23 -29.84 15 12 H 0.03 1.90 7.84 -2.91 -0.02 1.87 15 13 C 0.02 1.20 5.47 84.66 0.46 1.66 15 14 N -0.94 -57.42 13.96 21.45 0.30 -57.12 15 15 Si 0.95 42.68 26.84 68.60 1.84 44.52 15 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 18 H -0.25 -10.18 6.56 99.48 0.65 -9.53 15 19 N -0.74 -32.63 6.05 -320.95 -1.94 -34.58 15 20 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 21 H 0.08 1.69 8.08 -2.39 -0.02 1.67 15 22 H 0.06 1.51 7.71 -2.39 -0.02 1.49 15 23 H 0.14 3.06 8.06 -2.91 -0.02 3.03 15 24 H 0.15 3.09 8.06 -2.91 -0.02 3.06 15 25 H 0.12 3.66 8.06 -2.91 -0.02 3.63 15 26 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 27 H 0.06 2.76 7.56 -2.38 -0.02 2.74 15 28 H 0.27 15.37 8.31 -92.70 -0.77 14.60 15 29 H 0.40 16.67 8.41 -92.71 -0.78 15.89 15 Total: -1.00 -65.17 244.35 2.93 -62.24 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.31 Total: 22.52 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 2.41 Total: -37.58 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.64 Total: -91.70 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.84 Total: 44.52 kcal Total: -65.17 2.93 -62.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.024 kcal (2) G-P(sol) polarization free energy of solvation -65.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds