Wall clock time and date at job start Mon Mar 30 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99487 * 2 1 4 4 H 1.48495 * 109.46995 * 269.99893 * 3 2 1 5 5 H 1.48497 * 109.47343 * 30.00158 * 3 2 1 6 6 H 1.48495 * 109.46718 * 150.00048 * 3 2 1 7 7 C 1.37870 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 185.09899 * 7 2 1 9 9 C 1.50704 * 119.99667 * 5.10155 * 7 2 1 10 10 H 1.09001 * 109.30586 * 25.27549 * 9 7 2 11 11 C 1.52828 * 109.30657 * 265.86648 * 9 7 2 12 12 C 1.53243 * 108.27656 * 188.75594 * 11 9 7 13 13 C 1.52801 * 108.56395 * 70.09028 * 12 11 9 14 14 C 1.50466 * 110.31096 * 308.66365 * 13 12 11 15 15 C 1.38757 * 118.54719 * 197.75326 * 14 13 12 16 16 N 1.31672 * 121.01731 * 180.25213 * 15 14 13 17 17 C 1.31889 * 121.64589 * 359.97438 * 16 15 14 18 18 C 1.38053 * 120.59094 * 359.91858 * 17 16 15 19 19 C 1.37842 * 122.52779 * 17.80247 * 14 13 12 20 20 H 0.97004 * 120.00855 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.63862 * 308.51508 * 11 9 7 22 22 H 1.09001 * 109.63942 * 68.92585 * 11 9 7 23 23 H 1.09000 * 109.76923 * 310.27507 * 12 11 9 24 24 H 1.09002 * 109.45248 * 189.72020 * 12 11 9 25 25 H 1.09001 * 109.30571 * 188.45889 * 13 12 11 26 26 H 1.09004 * 109.30029 * 68.86938 * 13 12 11 27 27 H 1.07997 * 119.49036 * 0.24611 * 15 14 13 28 28 H 1.07999 * 119.70284 * 179.90128 * 17 16 15 29 29 H 1.07994 * 120.33864 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0814 -1.1957 0.0837 9 6 1.2556 -2.4966 -0.1149 10 1 0.3063 -2.3227 -0.6216 11 6 0.9835 -3.0487 1.2839 12 6 0.4225 -4.4675 1.1398 13 6 1.5413 -5.3856 0.6499 14 6 2.2017 -4.7999 -0.5686 15 6 2.9682 -5.6321 -1.3720 16 7 3.5717 -5.1697 -2.4470 17 6 3.4742 -3.9040 -2.8050 18 6 2.7269 -3.0176 -2.0556 19 6 2.0744 -3.4716 -0.9144 20 1 -0.4851 0.8400 0.0004 21 1 1.9120 -3.0753 1.8542 22 1 0.2585 -2.4141 1.7937 23 1 -0.3948 -4.4692 0.4186 24 1 0.0611 -4.8149 2.1077 25 1 1.1237 -6.3608 0.3997 26 1 2.2828 -5.5032 1.4402 27 1 3.0715 -6.6750 -1.1114 28 1 3.9837 -3.5580 -3.6921 29 1 2.6495 -1.9822 -2.3526 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990835.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:17 Heat of formation + Delta-G solvation = 7.922597 kcal Electronic energy + Delta-G solvation = -12868.606175 eV Core-core repulsion = 10755.308624 eV Total energy + Delta-G solvation = -2113.297551 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81377 -36.15909 -33.26579 -31.45818 -30.18537 -28.57326 -25.08018 -23.09178 -22.32277 -21.22817 -18.73322 -16.60085 -15.87230 -15.44997 -14.63718 -14.45066 -13.81376 -13.18671 -12.96778 -12.76945 -12.43009 -11.77916 -11.40148 -11.35511 -10.96018 -10.92937 -10.46149 -10.17126 -10.06103 -9.52674 -9.25173 -8.58097 -8.55797 -8.30275 -8.14061 -6.14518 -4.18342 1.84533 2.16905 3.23879 3.31566 3.34911 4.33382 4.56434 5.07091 5.15016 5.36263 5.51344 5.68701 5.70936 5.85027 6.00184 6.18172 6.33788 6.45670 6.47957 6.55435 6.58506 6.87174 6.96321 7.05074 7.30855 7.52345 7.58093 7.73265 7.80741 8.26277 8.64307 8.89333 9.45878 10.94382 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.012360 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.824220 B = 2264.879892 C = 2867.420103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.062 3.938 10 H 0.075 0.925 11 C -0.101 4.101 12 C -0.123 4.123 13 C -0.068 4.068 14 C -0.148 4.148 15 C 0.082 3.918 16 N -0.507 5.507 17 C 0.068 3.932 18 C -0.151 4.151 19 C 0.004 3.996 20 H 0.263 0.737 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 -6.611 -0.186 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.044 3.956 10 H 0.092 0.908 11 C -0.139 4.139 12 C -0.161 4.161 13 C -0.105 4.105 14 C -0.150 4.150 15 C -0.077 4.077 16 N -0.217 5.217 17 C -0.087 4.087 18 C -0.171 4.171 19 C -0.003 4.003 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.331 -7.031 -0.718 7.442 hybrid contribution -0.004 1.559 0.487 1.633 sum 2.328 -5.472 -0.231 5.951 Atomic orbital electron populations 1.69918 1.05971 1.26960 1.49862 1.24979 0.94853 0.99242 0.94581 0.86589 0.79940 0.83249 0.78287 1.20470 1.21173 1.19800 1.20987 0.93192 0.89671 1.50998 0.92522 1.17966 0.95914 0.90822 0.90887 0.90772 1.21640 0.99566 0.92809 0.99904 1.21656 0.97316 0.97343 0.99793 1.20291 0.97607 0.98017 0.94613 1.20593 1.01007 0.94645 0.98795 1.22527 0.94635 0.99228 0.91301 1.67471 1.21442 1.16253 1.16495 1.22552 0.97724 0.89156 0.99229 1.22299 0.97667 1.01440 0.95671 1.20835 0.92973 0.92970 0.93560 0.92688 0.93562 0.91914 0.92344 0.92953 0.91872 0.91407 0.84238 0.83994 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 12.84 55.43 0.71 -23.94 15 2 C 0.07 1.75 5.45 -17.82 -0.10 1.65 15 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.51 -13.34 7.00 -34.44 -0.24 -13.58 15 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 15 9 C 0.06 1.49 2.25 -93.18 -0.21 1.28 15 10 H 0.07 1.98 7.38 -51.93 -0.38 1.60 15 11 C -0.10 -2.18 5.25 -26.69 -0.14 -2.32 15 12 C -0.12 -2.18 5.95 -26.71 -0.16 -2.34 15 13 C -0.07 -1.10 5.72 -28.10 -0.16 -1.26 15 14 C -0.15 -2.83 5.73 -104.69 -0.60 -3.43 15 15 C 0.08 1.47 10.80 -17.43 -0.19 1.28 15 16 N -0.51 -9.71 10.36 -13.19 -0.14 -9.84 15 17 C 0.07 1.26 11.19 -17.60 -0.20 1.07 15 18 C -0.15 -3.14 9.15 -39.34 -0.36 -3.50 15 19 C 0.00 0.10 5.41 -104.63 -0.57 -0.47 15 20 H 0.26 6.96 8.31 -40.82 -0.34 6.63 15 21 H 0.05 1.00 8.08 -51.93 -0.42 0.58 15 22 H 0.06 1.45 8.14 -51.93 -0.42 1.03 15 23 H 0.06 1.06 8.10 -51.93 -0.42 0.64 15 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 25 H 0.06 0.88 8.13 -51.93 -0.42 0.45 15 26 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 27 H 0.14 2.06 8.06 -52.49 -0.42 1.63 15 28 H 0.14 2.21 8.06 -52.49 -0.42 1.79 15 29 H 0.14 2.91 7.39 -52.49 -0.39 2.52 15 LS Contribution 243.71 15.07 3.67 3.67 Total: -1.00 -27.85 243.71 -7.39 -35.23 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.69 Total: 0.92 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.92 Total: -21.62 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.57 Total: -33.78 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.85 -7.39 -35.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990835.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds