Wall clock time and date at job start Mon Mar 30 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99487 * 2 1 4 4 H 1.48495 * 109.46995 * 269.99893 * 3 2 1 5 5 H 1.48497 * 109.47343 * 30.00158 * 3 2 1 6 6 H 1.48495 * 109.46718 * 150.00048 * 3 2 1 7 7 C 1.37870 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 185.09899 * 7 2 1 9 9 C 1.50704 * 119.99667 * 5.10155 * 7 2 1 10 10 H 1.09001 * 109.30586 * 25.27549 * 9 7 2 11 11 C 1.52828 * 109.30657 * 265.86648 * 9 7 2 12 12 C 1.53243 * 108.27656 * 188.75594 * 11 9 7 13 13 C 1.52801 * 108.56395 * 70.09028 * 12 11 9 14 14 C 1.50466 * 110.31096 * 308.66365 * 13 12 11 15 15 C 1.38757 * 118.54719 * 197.75326 * 14 13 12 16 16 N 1.31672 * 121.01731 * 180.25213 * 15 14 13 17 17 C 1.31889 * 121.64589 * 359.97438 * 16 15 14 18 18 C 1.38053 * 120.59094 * 359.91858 * 17 16 15 19 19 C 1.37842 * 122.52779 * 17.80247 * 14 13 12 20 20 H 0.97004 * 120.00855 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.63862 * 308.51508 * 11 9 7 22 22 H 1.09001 * 109.63942 * 68.92585 * 11 9 7 23 23 H 1.09000 * 109.76923 * 310.27507 * 12 11 9 24 24 H 1.09002 * 109.45248 * 189.72020 * 12 11 9 25 25 H 1.09001 * 109.30571 * 188.45889 * 13 12 11 26 26 H 1.09004 * 109.30029 * 68.86938 * 13 12 11 27 27 H 1.07997 * 119.49036 * 0.24611 * 15 14 13 28 28 H 1.07999 * 119.70284 * 179.90128 * 17 16 15 29 29 H 1.07994 * 120.33864 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0814 -1.1957 0.0837 9 6 1.2556 -2.4966 -0.1149 10 1 0.3063 -2.3227 -0.6216 11 6 0.9835 -3.0487 1.2839 12 6 0.4225 -4.4675 1.1398 13 6 1.5413 -5.3856 0.6499 14 6 2.2017 -4.7999 -0.5686 15 6 2.9682 -5.6321 -1.3720 16 7 3.5717 -5.1697 -2.4470 17 6 3.4742 -3.9040 -2.8050 18 6 2.7269 -3.0176 -2.0556 19 6 2.0744 -3.4716 -0.9144 20 1 -0.4851 0.8400 0.0004 21 1 1.9120 -3.0753 1.8542 22 1 0.2585 -2.4141 1.7937 23 1 -0.3948 -4.4692 0.4186 24 1 0.0611 -4.8149 2.1077 25 1 1.1237 -6.3608 0.3997 26 1 2.2828 -5.5032 1.4402 27 1 3.0715 -6.6750 -1.1114 28 1 3.9837 -3.5580 -3.6921 29 1 2.6495 -1.9822 -2.3526 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990835.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:17 Heat of formation + Delta-G solvation = -7.468657 kcal Electronic energy + Delta-G solvation = -12869.273590 eV Core-core repulsion = 10755.308624 eV Total energy + Delta-G solvation = -2113.964966 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.33318 -37.75203 -35.06771 -33.17003 -31.75186 -30.19894 -26.94174 -24.66853 -23.86661 -22.86528 -20.29718 -18.57556 -17.51154 -16.97931 -16.34373 -16.09069 -15.29012 -14.72361 -14.53009 -14.49702 -14.11592 -13.31307 -13.03748 -12.99026 -12.73271 -12.65025 -12.17310 -11.97720 -11.61990 -11.35475 -11.07511 -10.50872 -10.10981 -10.00689 -9.60506 -8.18469 -6.27797 0.36930 0.58967 1.38543 1.40277 1.49809 2.39328 3.05627 3.11808 3.71791 3.97581 4.04829 4.26834 4.28343 4.30067 4.57899 4.67747 4.90267 4.94025 4.98916 5.07273 5.10536 5.30082 5.36387 5.38137 5.58577 5.66180 5.80963 5.96848 6.04582 6.30290 6.84956 7.16373 7.38625 8.90222 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.012360 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.824220 B = 2264.879892 C = 2867.420103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.518 4.518 8 H 0.047 0.953 9 C 0.063 3.937 10 H 0.035 0.965 11 C -0.097 4.097 12 C -0.116 4.116 13 C -0.064 4.064 14 C -0.150 4.150 15 C 0.088 3.912 16 N -0.513 5.513 17 C 0.073 3.927 18 C -0.171 4.171 19 C -0.026 4.026 20 H 0.264 0.736 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.181 0.819 28 H 0.172 0.828 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -8.446 -0.045 8.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.065 0.935 9 C 0.045 3.955 10 H 0.052 0.948 11 C -0.135 4.135 12 C -0.154 4.154 13 C -0.102 4.102 14 C -0.152 4.152 15 C -0.071 4.071 16 N -0.223 5.223 17 C -0.081 4.081 18 C -0.191 4.191 19 C -0.034 4.034 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.198 0.802 28 H 0.189 0.811 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.409 -8.871 -0.578 9.521 hybrid contribution -0.319 2.070 0.423 2.137 sum 3.090 -6.801 -0.154 7.471 Atomic orbital electron populations 1.70035 1.07272 1.27581 1.51263 1.25691 0.95572 1.02341 0.94553 0.85652 0.78716 0.79499 0.78440 1.19843 1.20869 1.19449 1.21221 0.92819 0.91213 1.50305 0.93487 1.17797 0.94348 0.91161 0.92224 0.94752 1.21481 0.98853 0.95214 0.97949 1.21581 0.97606 0.94926 1.01281 1.20379 0.97218 0.98814 0.93747 1.20910 1.00910 0.93471 0.99919 1.23138 0.93008 1.00774 0.90157 1.67593 1.21602 1.16034 1.17034 1.22895 0.96851 0.88795 0.99581 1.22274 0.99100 1.01275 0.96406 1.20747 0.94202 0.94185 0.94267 0.92743 0.93833 0.94643 0.93273 0.90045 0.88172 0.89627 0.80172 0.81130 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 12.84 21.44 0.28 -52.79 15 2 C 0.02 0.95 5.45 84.65 0.46 1.42 15 3 Si 0.95 43.12 29.54 68.60 2.03 45.15 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 7 C -0.52 -27.98 7.00 25.60 0.18 -27.80 15 8 H 0.05 2.57 7.82 -2.91 -0.02 2.55 15 9 C 0.06 3.12 2.25 -12.45 -0.03 3.10 15 10 H 0.03 1.95 7.38 -2.39 -0.02 1.93 15 11 C -0.10 -4.24 5.25 30.62 0.16 -4.08 15 12 C -0.12 -3.91 5.95 30.61 0.18 -3.73 15 13 C -0.06 -1.86 5.72 29.71 0.17 -1.69 15 14 C -0.15 -5.38 5.73 -19.91 -0.11 -5.50 15 15 C 0.09 2.83 10.80 84.84 0.92 3.74 15 16 N -0.51 -18.15 10.36 -195.65 -2.03 -20.18 15 17 C 0.07 2.61 11.19 84.64 0.95 3.56 15 18 C -0.17 -7.14 9.15 22.43 0.21 -6.94 15 19 C -0.03 -1.14 5.41 -19.87 -0.11 -1.25 15 20 H 0.26 14.40 8.31 -92.71 -0.77 13.63 15 21 H 0.04 1.88 8.08 -2.39 -0.02 1.86 15 22 H 0.03 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.05 1.73 8.10 -2.39 -0.02 1.71 15 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.10 2.23 8.13 -2.39 -0.02 2.21 15 26 H 0.09 2.24 8.14 -2.38 -0.02 2.22 15 27 H 0.18 4.30 8.06 -2.91 -0.02 4.28 15 28 H 0.17 4.96 8.06 -2.91 -0.02 4.93 15 29 H 0.12 5.34 7.39 -2.91 -0.02 5.32 15 Total: -1.00 -61.28 243.71 4.37 -56.90 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.13 Total: 10.08 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 2.97 Total: -39.17 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.75 Total: -72.97 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -61.28 4.37 -56.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990835.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.434 kcal (2) G-P(sol) polarization free energy of solvation -61.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds