Wall clock time and date at job start Mon Mar 30 2020 02:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36707 * 120.35407 * 2 1 4 4 C 1.40094 * 119.68756 * 179.97438 * 3 2 1 5 5 C 1.35503 * 120.21072 * 0.02562 * 4 3 2 6 6 N 1.35947 * 120.49295 * 359.73894 * 5 4 3 7 7 C 1.37998 * 133.49596 * 179.62045 * 6 5 4 8 8 C 1.39635 * 126.52398 * 0.70423 * 7 6 5 9 9 H 1.08002 * 120.00429 * 359.71967 * 8 7 6 10 10 C 1.40023 * 120.00022 * 179.43370 * 8 7 6 11 11 N 1.30884 * 119.99554 * 0.28235 * 10 8 7 12 12 Si 1.86798 * 120.00465 * 180.27716 * 10 8 7 13 13 H 1.48508 * 109.46609 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46903 * 119.99990 * 12 10 8 15 15 H 1.48498 * 109.47416 * 240.00405 * 12 10 8 16 16 N 1.33505 * 106.94838 * 180.44804 * 7 6 5 17 17 N 1.28621 * 109.92803 * 0.22649 * 16 7 6 18 18 C 1.33238 * 109.98801 * 0.02562 * 17 16 7 19 19 H 1.09000 * 109.47200 * 270.02006 * 1 2 3 20 20 H 1.09005 * 109.47303 * 30.02028 * 1 2 3 21 21 H 1.09005 * 109.47435 * 150.01710 * 1 2 3 22 22 H 1.08006 * 120.15777 * 0.02562 * 3 2 1 23 23 H 1.08006 * 119.90294 * 179.97438 * 4 3 2 24 24 H 1.08000 * 119.75805 * 179.97438 * 5 4 3 25 25 H 0.97005 * 119.99716 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1797 0.0000 4 6 3.5987 1.1634 0.0005 5 6 4.2668 -0.0155 0.0005 6 7 3.5879 -1.1932 0.0054 7 6 3.9807 -2.5161 0.0000 8 6 5.2930 -2.9934 0.0010 9 1 6.1202 -2.2990 0.0017 10 6 5.5365 -4.3722 0.0070 11 7 4.5340 -5.2137 0.0061 12 14 7.2919 -5.0108 0.0161 13 1 8.2356 -3.8641 0.0161 14 1 7.5131 -5.8334 1.2325 15 1 7.5226 -5.8422 -1.1925 16 7 2.8673 -3.2527 -0.0006 17 7 1.8345 -2.4862 -0.0008 18 6 2.2150 -1.2093 -0.0009 19 1 -0.3633 0.0004 1.0277 20 1 -0.3634 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5136 22 1 1.6662 2.1198 0.0004 23 1 4.1480 2.0933 0.0001 24 1 5.3468 -0.0195 0.0005 25 1 4.7027 -6.1690 0.0098 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261010588.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:42 Heat of formation + Delta-G solvation = 88.033049 kcal Electronic energy + Delta-G solvation = -12471.926273 eV Core-core repulsion = 10258.562228 eV Total energy + Delta-G solvation = -2213.364045 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.45065 -36.84794 -33.98550 -33.30175 -30.35196 -29.10984 -26.36674 -25.59024 -22.18624 -21.78959 -20.45104 -17.40154 -16.47424 -15.85435 -15.03059 -14.83535 -14.56607 -13.45695 -13.29840 -12.75788 -12.08566 -11.74302 -11.43290 -11.38214 -11.06223 -11.05345 -10.85731 -10.36812 -9.87974 -9.83550 -9.33036 -8.63699 -8.08923 -7.06536 -6.76192 -4.56563 1.69754 2.40734 2.98463 3.01155 3.06476 3.73869 4.01226 4.09818 4.57439 5.21672 5.28366 5.41592 5.64010 5.69193 6.02509 6.05974 6.13393 6.42974 6.58182 6.74999 6.88896 6.98222 7.14059 7.26440 7.59554 7.98515 8.04825 8.59147 8.73014 10.16539 10.46961 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.057518 B = 0.010442 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.685064 B = 2680.811582 C = 3152.345472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.028 4.028 3 C -0.146 4.146 4 C -0.192 4.192 5 C 0.098 3.902 6 N -0.438 5.438 7 C 0.316 3.684 8 C -0.437 4.437 9 H 0.087 0.913 10 C 0.074 3.926 11 N -0.734 5.734 12 Si 0.925 3.075 13 H -0.261 1.261 14 H -0.271 1.271 15 H -0.271 1.271 16 N -0.304 5.304 17 N -0.286 5.286 18 C 0.088 3.912 19 H 0.066 0.934 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.120 0.880 23 H 0.130 0.870 24 H 0.146 0.854 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 8.171 0.001 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.032 4.032 3 C -0.170 4.170 4 C -0.215 4.215 5 C -0.026 4.026 6 N -0.125 5.125 7 C 0.077 3.923 8 C -0.477 4.477 9 H 0.105 0.895 10 C -0.152 4.152 11 N -0.358 5.358 12 Si 0.749 3.251 13 H -0.184 1.184 14 H -0.196 1.196 15 H -0.196 1.196 16 N -0.150 5.150 17 N -0.132 5.132 18 C -0.160 4.160 19 H 0.085 0.915 20 H 0.080 0.920 21 H 0.090 0.910 22 H 0.138 0.862 23 H 0.148 0.852 24 H 0.164 0.836 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.193 6.459 0.008 6.462 hybrid contribution 1.784 0.898 0.021 1.998 sum 1.978 7.357 0.030 7.618 Atomic orbital electron populations 1.20555 0.90630 1.02372 1.01944 1.18706 0.95551 0.89161 0.99806 1.20538 0.93691 0.96603 1.06210 1.20348 0.94629 0.96096 1.10467 1.21325 0.97809 0.84153 0.99334 1.43673 1.07786 1.06528 1.54537 1.21680 0.97113 0.75232 0.98295 1.18172 0.88558 0.92750 1.48178 0.89470 1.25829 0.99705 0.96209 0.93421 1.70036 1.32266 1.03791 1.29679 0.85983 0.80858 0.79490 0.78778 1.18430 1.19580 1.19569 1.75703 0.92550 1.20579 1.26124 1.74713 1.24642 0.96757 1.17095 1.21306 0.81699 0.95897 1.17131 0.91524 0.92041 0.90965 0.86162 0.85237 0.83623 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.03 36.00 0.36 -1.24 15 2 C -0.03 -0.57 5.90 -104.47 -0.62 -1.19 15 3 C -0.15 -2.53 9.74 -39.44 -0.38 -2.91 15 4 C -0.19 -3.27 10.00 -39.86 -0.40 -3.67 15 5 C 0.10 1.99 10.88 -16.70 -0.18 1.80 15 6 N -0.44 -11.07 2.99 -62.03 -0.19 -11.26 15 7 C 0.32 8.98 7.59 -154.85 -1.17 7.80 15 8 C -0.44 -11.61 9.27 -38.39 -0.36 -11.97 15 9 H 0.09 2.09 7.85 -52.49 -0.41 1.68 15 10 C 0.07 1.88 5.50 -17.29 -0.10 1.78 15 11 N -0.73 -20.05 11.93 55.55 0.66 -19.39 15 12 Si 0.93 18.28 29.56 -169.99 -5.03 13.26 15 13 H -0.26 -4.96 7.11 56.52 0.40 -4.55 15 14 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 15 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 16 N -0.30 -9.29 10.48 31.23 0.33 -8.96 15 17 N -0.29 -8.19 12.31 31.15 0.38 -7.81 15 18 C 0.09 2.23 7.59 -155.56 -1.18 1.05 15 19 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 20 H 0.06 0.81 8.09 -51.93 -0.42 0.39 15 21 H 0.07 1.27 8.10 -51.93 -0.42 0.85 15 22 H 0.12 1.65 8.06 -52.48 -0.42 1.22 15 23 H 0.13 1.70 8.06 -52.48 -0.42 1.27 15 24 H 0.15 2.53 8.06 -52.49 -0.42 2.11 15 25 H 0.28 6.87 8.30 -40.82 -0.34 6.53 15 LS Contribution 229.73 15.07 3.46 3.46 Total: -1.00 -32.39 229.73 -6.48 -38.86 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.08 Total: 0.37 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -4.03 Total: -8.55 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 1.19 Total: -47.41 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.39 -6.48 -38.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010588.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.897 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds