Wall clock time and date at job start Mon Mar 30 2020 02:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99712 * 2 1 4 4 H 1.48504 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47273 * 299.99779 * 3 2 1 6 6 H 1.48493 * 109.47605 * 60.00175 * 3 2 1 7 7 C 1.37872 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46829 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.26429 * 52.93298 * 10 9 7 12 12 C 1.53748 * 110.29811 * 175.00261 * 10 9 7 13 13 C 1.51217 * 104.53857 * 118.92697 * 12 10 9 14 14 C 1.38169 * 130.98465 * 180.02562 * 13 12 10 15 15 C 1.38236 * 120.15018 * 180.02562 * 14 13 12 16 16 C 1.38297 * 119.83546 * 359.97438 * 15 14 13 17 17 C 1.37828 * 120.22995 * 0.02562 * 16 15 14 18 18 C 1.38601 * 108.54092 * 359.97438 * 13 12 10 19 19 N 1.39573 * 111.64692 * 0.25258 * 18 13 12 20 20 H 0.97002 * 119.99977 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46837 * 60.00349 * 9 7 2 22 22 H 1.08992 * 109.47273 * 299.99717 * 9 7 2 23 23 H 1.08997 * 110.42310 * 0.16308 * 12 10 9 24 24 H 1.08996 * 110.42109 * 237.69419 * 12 10 9 25 25 H 1.07999 * 119.92704 * 359.97438 * 14 13 12 26 26 H 1.08004 * 120.07874 * 179.97438 * 15 14 13 27 27 H 1.07994 * 119.88970 * 179.97438 * 16 15 14 28 28 H 1.07999 * 119.85948 * 179.97438 * 17 16 15 29 29 H 0.97005 * 124.95547 * 179.69503 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9592 -3.5485 0.8154 12 6 1.5002 -5.0010 0.1251 13 6 1.8489 -5.7498 -1.1416 14 6 1.4728 -7.0028 -1.5862 15 6 1.9320 -7.4749 -2.8016 16 6 2.7693 -6.6896 -3.5729 17 6 3.1472 -5.4391 -3.1336 18 6 2.6866 -4.9543 -1.9074 19 7 2.9498 -3.7338 -1.2835 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5566 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 0.4248 -4.8336 0.1841 24 1 1.8491 -5.5498 0.9997 25 1 0.8192 -7.6150 -0.9826 26 1 1.6377 -8.4547 -3.1478 27 1 3.1289 -7.0578 -4.5223 28 1 3.8016 -4.8310 -3.7406 29 1 3.5155 -3.0345 -1.6468 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051452.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:17 Heat of formation + Delta-G solvation = 18.310482 kcal Electronic energy + Delta-G solvation = -12430.533471 eV Core-core repulsion = 10317.686373 eV Total energy + Delta-G solvation = -2112.847098 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.78174 -36.11635 -32.96057 -31.50116 -29.97354 -28.29684 -26.66055 -23.25694 -21.68394 -20.73932 -20.02961 -16.95332 -16.33557 -15.29448 -15.01419 -14.71674 -13.93314 -13.38629 -13.21635 -12.40781 -12.28512 -11.76357 -11.72931 -11.63959 -11.13768 -11.05854 -10.57071 -10.45943 -10.34535 -9.99654 -9.22494 -9.13870 -8.44963 -8.33929 -6.67329 -6.07304 -4.10728 1.84471 2.08800 3.25791 3.33845 3.36538 4.13978 4.30254 4.39355 5.13676 5.29385 5.35910 5.45299 5.54661 5.84433 5.88295 5.98332 6.00825 6.38337 6.46471 6.54375 6.79149 6.84302 6.97980 7.04804 7.22667 7.51084 7.63431 7.87463 7.92251 8.29899 8.58407 8.94864 9.53647 11.03695 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.059819 B = 0.007719 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.965066 B = 3626.361069 C = 3848.531351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.013 3.987 10 C 0.148 3.852 11 H 0.065 0.935 12 C -0.082 4.082 13 C -0.178 4.178 14 C -0.063 4.063 15 C -0.195 4.195 16 C -0.077 4.077 17 C -0.199 4.199 18 C 0.212 3.788 19 N -0.719 5.719 20 H 0.261 0.739 21 H 0.023 0.977 22 H 0.028 0.972 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -10.819 -3.122 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.025 4.025 10 C 0.043 3.957 11 H 0.083 0.917 12 C -0.120 4.120 13 C -0.183 4.183 14 C -0.081 4.081 15 C -0.216 4.216 16 C -0.096 4.096 17 C -0.222 4.222 18 C 0.104 3.896 19 N -0.346 5.346 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.091 -10.555 -2.947 11.697 hybrid contribution 0.604 1.376 -0.234 1.521 sum 4.694 -9.179 -3.181 10.789 Atomic orbital electron populations 1.69971 1.06061 1.26609 1.50463 1.25010 0.94830 0.99264 0.95202 0.86544 0.80024 0.83837 0.77623 1.19801 1.21045 1.20962 1.21170 0.92833 0.90915 1.51009 0.92758 1.19559 0.93765 0.91198 0.97969 1.21678 0.94265 0.95296 0.84420 0.91742 1.21184 1.01464 0.94596 0.94722 1.20028 1.03765 0.95839 0.98644 1.20266 0.98288 0.93899 0.95680 1.20634 1.03881 1.00570 0.96501 1.20618 0.96880 0.93486 0.98589 1.20265 1.07524 0.98004 0.96415 1.18545 0.92303 0.86738 0.91968 1.45107 1.52745 1.15301 1.21444 0.92953 0.95844 0.95416 0.90046 0.91066 0.86957 0.86939 0.86826 0.87088 0.75148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.52 -14.18 8.96 -34.44 -0.31 -14.49 15 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 15 9 C 0.01 0.32 4.46 -27.88 -0.12 0.20 15 10 C 0.15 3.04 3.60 -67.52 -0.24 2.79 15 11 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 12 C -0.08 -1.48 6.58 -27.24 -0.18 -1.66 15 13 C -0.18 -3.17 6.23 -104.26 -0.65 -3.82 15 14 C -0.06 -0.97 10.04 -39.61 -0.40 -1.37 15 15 C -0.20 -2.79 10.06 -39.56 -0.40 -3.19 15 16 C -0.08 -1.11 10.02 -39.71 -0.40 -1.51 15 17 C -0.20 -3.24 10.07 -39.19 -0.39 -3.63 15 18 C 0.21 3.93 7.03 -83.66 -0.59 3.34 15 19 N -0.72 -14.03 6.02 -51.67 -0.31 -14.34 15 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.02 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.08 1.48 7.70 -51.93 -0.40 1.08 15 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 26 H 0.11 1.31 8.06 -52.48 -0.42 0.89 15 27 H 0.11 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.11 1.63 8.06 -52.49 -0.42 1.20 15 29 H 0.41 7.73 8.96 -40.82 -0.37 7.37 15 LS Contribution 250.20 15.07 3.77 3.77 Total: -1.00 -29.60 250.20 -8.29 -37.90 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.69 Total: 3.90 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -3.78 Total: -21.79 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.43 Total: -40.04 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.60 -8.29 -37.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051452.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.206 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds