Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99712 * 2 1 4 4 H 1.48504 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47273 * 299.99779 * 3 2 1 6 6 H 1.48493 * 109.47605 * 60.00175 * 3 2 1 7 7 C 1.37872 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46829 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.26429 * 52.93298 * 10 9 7 12 12 C 1.53748 * 110.29811 * 175.00261 * 10 9 7 13 13 C 1.51217 * 104.53857 * 118.92697 * 12 10 9 14 14 C 1.38169 * 130.98465 * 180.02562 * 13 12 10 15 15 C 1.38236 * 120.15018 * 180.02562 * 14 13 12 16 16 C 1.38297 * 119.83546 * 359.97438 * 15 14 13 17 17 C 1.37828 * 120.22995 * 0.02562 * 16 15 14 18 18 C 1.38601 * 108.54092 * 359.97438 * 13 12 10 19 19 N 1.39573 * 111.64692 * 0.25258 * 18 13 12 20 20 H 0.97002 * 119.99977 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46837 * 60.00349 * 9 7 2 22 22 H 1.08992 * 109.47273 * 299.99717 * 9 7 2 23 23 H 1.08997 * 110.42310 * 0.16308 * 12 10 9 24 24 H 1.08996 * 110.42109 * 237.69419 * 12 10 9 25 25 H 1.07999 * 119.92704 * 359.97438 * 14 13 12 26 26 H 1.08004 * 120.07874 * 179.97438 * 15 14 13 27 27 H 1.07994 * 119.88970 * 179.97438 * 16 15 14 28 28 H 1.07999 * 119.85948 * 179.97438 * 17 16 15 29 29 H 0.97005 * 124.95547 * 179.69503 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9592 -3.5485 0.8154 12 6 1.5002 -5.0010 0.1251 13 6 1.8489 -5.7498 -1.1416 14 6 1.4728 -7.0028 -1.5862 15 6 1.9320 -7.4749 -2.8016 16 6 2.7693 -6.6896 -3.5729 17 6 3.1472 -5.4391 -3.1336 18 6 2.6866 -4.9543 -1.9074 19 7 2.9498 -3.7338 -1.2835 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5566 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 0.4248 -4.8336 0.1841 24 1 1.8491 -5.5498 0.9997 25 1 0.8192 -7.6150 -0.9826 26 1 1.6377 -8.4547 -3.1478 27 1 3.1289 -7.0578 -4.5223 28 1 3.8016 -4.8310 -3.7406 29 1 3.5155 -3.0345 -1.6468 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051452.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = 0.791577 kcal Electronic energy + Delta-G solvation = -12431.293148 eV Core-core repulsion = 10317.686373 eV Total energy + Delta-G solvation = -2113.606775 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.13199 -37.52129 -34.99707 -32.84836 -31.67343 -29.61678 -28.38027 -25.13161 -23.00187 -22.00935 -21.70141 -18.64787 -18.07856 -16.69204 -16.67317 -16.25252 -15.48416 -14.73496 -14.54471 -14.25678 -13.67380 -13.61429 -13.27940 -13.17013 -12.87317 -12.49647 -12.27793 -12.25554 -11.84644 -11.59572 -11.14346 -10.76365 -10.61882 -9.56336 -8.23230 -8.06979 -6.33320 0.62115 0.84614 1.37653 1.38406 1.50712 2.37835 2.70388 3.06302 3.12880 3.83275 3.96963 4.29989 4.34486 4.36006 4.61365 4.70923 4.80279 4.85974 5.06109 5.13514 5.26369 5.37209 5.51379 5.65843 5.72389 5.79915 5.82230 6.04398 6.20111 6.47574 6.81782 7.13614 7.35756 8.89527 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.059819 B = 0.007719 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.965066 B = 3626.361069 C = 3848.531351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.155 3.845 11 H 0.067 0.933 12 C -0.077 4.077 13 C -0.199 4.199 14 C -0.069 4.069 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.206 4.206 18 C 0.180 3.820 19 N -0.730 5.730 20 H 0.263 0.737 21 H -0.013 1.013 22 H 0.005 0.995 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -12.110 -3.960 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.570 4.570 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.049 3.951 11 H 0.085 0.915 12 C -0.115 4.115 13 C -0.204 4.204 14 C -0.087 4.087 15 C -0.207 4.207 16 C -0.095 4.095 17 C -0.229 4.229 18 C 0.074 3.926 19 N -0.359 5.359 20 H 0.072 0.928 21 H 0.005 0.995 22 H 0.024 0.976 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.154 0.846 26 H 0.165 0.835 27 H 0.166 0.834 28 H 0.140 0.860 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.207 -11.884 -3.799 13.520 hybrid contribution 0.227 1.659 -0.044 1.675 sum 5.434 -10.225 -3.844 12.201 Atomic orbital electron populations 1.70108 1.07837 1.27650 1.51739 1.25945 0.95682 1.03272 0.94832 0.85407 0.79108 0.78956 0.77593 1.18501 1.20812 1.20446 1.21563 0.93343 0.91876 1.50213 0.92051 1.19401 0.94056 0.93082 0.95052 1.21400 0.93446 0.94806 0.85404 0.91517 1.21092 1.00482 0.93553 0.96328 1.20223 1.04610 0.97028 0.98562 1.20629 0.98338 0.93177 0.96560 1.21113 1.02352 1.01724 0.95500 1.21071 0.96110 0.92507 0.99795 1.20579 1.07574 0.99071 0.95719 1.18864 0.93831 0.86579 0.93295 1.44973 1.53320 1.16184 1.21415 0.92838 0.99493 0.97632 0.91076 0.88722 0.84638 0.83525 0.83430 0.86025 0.75360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 15 2 C 0.00 0.03 5.46 84.65 0.46 0.49 15 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 15 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 7 C -0.53 -29.58 8.96 25.60 0.23 -29.35 15 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 15 9 C 0.02 1.16 4.46 29.85 0.13 1.29 15 10 C 0.15 6.50 3.60 45.24 0.16 6.66 15 11 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 12 C -0.08 -2.78 6.58 30.26 0.20 -2.58 15 13 C -0.20 -6.94 6.23 -19.63 -0.12 -7.06 15 14 C -0.07 -1.95 10.04 22.25 0.22 -1.73 15 15 C -0.19 -4.63 10.06 22.28 0.22 -4.40 15 16 C -0.08 -1.95 10.02 22.19 0.22 -1.72 15 17 C -0.21 -6.38 10.07 22.52 0.23 -6.15 15 18 C 0.18 6.57 7.03 38.34 0.27 6.84 15 19 N -0.73 -28.97 6.02 -317.37 -1.91 -30.88 15 20 H 0.26 15.03 8.31 -92.71 -0.77 14.25 15 21 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 15 22 H 0.01 0.30 8.14 -2.39 -0.02 0.28 15 23 H 0.07 2.66 7.70 -2.39 -0.02 2.64 15 24 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.14 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.15 2.64 8.06 -2.91 -0.02 2.62 15 27 H 0.15 2.73 8.06 -2.91 -0.02 2.70 15 28 H 0.12 3.38 8.06 -2.91 -0.02 3.36 15 29 H 0.41 15.75 8.96 -92.70 -0.83 14.92 15 Total: -1.00 -64.36 250.20 2.94 -61.43 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.31 Total: 17.58 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 2.23 Total: -37.71 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.63 Total: -87.35 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.36 2.94 -61.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051452.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.217 kcal (2) G-P(sol) polarization free energy of solvation -64.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds