Wall clock time and date at job start Mon Mar 30 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48502 * 109.46948 * 270.00006 * 3 2 1 5 5 H 1.48492 * 109.47065 * 30.00216 * 3 2 1 6 6 H 1.48502 * 109.47002 * 150.00330 * 3 2 1 7 7 C 1.37881 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99904 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00238 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47555 * 180.02562 * 9 7 2 11 11 C 1.38261 * 120.45125 * 265.00684 * 10 9 7 12 12 N 1.31861 * 120.70601 * 180.02562 * 11 10 9 13 13 C 1.31858 * 121.78943 * 0.02562 * 12 11 10 14 14 C 1.38295 * 120.75809 * 0.03233 * 13 12 11 15 15 C 1.38518 * 119.04247 * 359.95761 * 14 13 12 16 16 C 1.51058 * 109.86735 * 180.02562 * 15 14 13 17 17 C 1.54419 * 105.15367 * 17.02362 * 16 15 14 18 18 C 1.51184 * 131.27303 * 179.65170 * 14 13 12 19 19 H 0.97002 * 119.99644 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46867 * 60.00183 * 9 7 2 21 21 H 1.09000 * 109.47675 * 300.00499 * 9 7 2 22 22 H 1.07998 * 119.64792 * 0.02777 * 11 10 9 23 23 H 1.08000 * 119.62434 * 180.02562 * 13 12 11 24 24 H 1.08994 * 110.30820 * 135.94116 * 16 15 14 25 25 H 1.09001 * 110.30520 * 258.00816 * 16 15 14 26 26 H 1.08999 * 110.80766 * 92.10675 * 17 16 15 27 27 H 1.09000 * 110.81216 * 215.42645 * 17 16 15 28 28 H 1.08998 * 110.29433 * 281.86334 * 18 14 13 29 29 H 1.08997 * 110.29834 * 43.99610 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0139 -2.6149 -0.0023 11 6 4.3458 -3.2417 1.1846 12 7 4.7863 -4.4845 1.1893 13 6 4.9284 -5.1755 0.0753 14 6 4.6174 -4.6140 -1.1497 15 6 4.1515 -3.3102 -1.1930 16 6 3.8782 -2.9100 -2.6237 17 6 3.8119 -4.2381 -3.4088 18 6 4.6941 -5.1742 -2.5518 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6805 0.8889 21 1 3.8746 -0.6800 -0.8910 22 1 4.2430 -2.7077 2.1177 23 1 5.2918 -6.1915 0.1199 24 1 2.9275 -2.3815 -2.6936 25 1 4.6867 -2.2848 -3.0026 26 1 2.7873 -4.6062 -3.4610 27 1 4.2301 -4.1185 -4.4082 28 1 5.7237 -5.1587 -2.9093 29 1 4.3003 -6.1902 -2.5751 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150176.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:35 Heat of formation + Delta-G solvation = 16.079133 kcal Electronic energy + Delta-G solvation = -12622.119012 eV Core-core repulsion = 10509.175155 eV Total energy + Delta-G solvation = -2112.943857 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.18300 -36.12808 -33.89064 -31.85864 -29.32770 -28.19625 -27.04048 -23.41837 -21.62777 -21.09292 -19.59909 -16.85993 -16.29566 -15.75895 -15.10278 -14.45332 -13.73167 -13.12400 -13.01842 -12.65106 -12.50615 -12.23367 -11.90499 -11.40142 -11.26188 -10.89686 -10.83187 -10.66684 -10.29979 -10.05205 -9.48875 -8.88373 -8.62642 -8.52309 -8.04144 -6.12553 -4.12446 1.73102 1.92945 3.24433 3.33058 3.35353 4.36565 4.37725 4.75213 4.85361 5.06848 5.19444 5.23831 5.45821 5.50689 5.67495 5.85091 5.95263 6.01167 6.08109 6.19417 6.40690 6.43719 6.49325 6.68842 6.88679 6.93624 7.29380 7.38159 7.62594 8.42863 8.56594 8.91738 9.47145 11.00247 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.037999 B = 0.010584 C = 0.009291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.677783 B = 2644.809873 C = 3012.868355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.020 3.980 10 C -0.067 4.067 11 C 0.086 3.914 12 N -0.488 5.488 13 C 0.080 3.920 14 C -0.158 4.158 15 C -0.054 4.054 16 C -0.084 4.084 17 C -0.120 4.120 18 C -0.071 4.071 19 H 0.265 0.735 20 H 0.030 0.970 21 H 0.025 0.975 22 H 0.153 0.847 23 H 0.142 0.858 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.340 -6.373 -5.201 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.018 4.018 10 C -0.069 4.069 11 C -0.070 4.070 12 N -0.196 5.196 13 C -0.077 4.077 14 C -0.160 4.160 15 C -0.062 4.062 16 C -0.121 4.121 17 C -0.157 4.157 18 C -0.109 4.109 19 H 0.075 0.925 20 H 0.048 0.952 21 H 0.043 0.957 22 H 0.170 0.830 23 H 0.159 0.841 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.389 -6.649 -4.390 12.314 hybrid contribution 0.023 1.312 -0.703 1.489 sum 9.411 -5.337 -5.093 11.958 Atomic orbital electron populations 1.69897 1.06263 1.27049 1.50401 1.24981 0.94720 0.98975 0.94393 0.86821 0.80457 0.83689 0.78673 1.20131 1.21158 1.18881 1.20860 0.88025 0.94625 1.51607 0.90959 1.18710 0.97560 0.87957 0.97530 1.20835 0.94803 0.99340 0.91896 1.22581 0.96149 0.90532 0.97739 1.67605 1.13552 1.08185 1.30219 1.21910 0.99561 0.99318 0.86916 1.21497 1.01975 0.96456 0.96094 1.20619 0.96290 0.93816 0.95455 1.20999 1.03379 0.97577 0.90124 1.22347 1.00208 0.95096 0.98084 1.20929 1.00162 0.99157 0.90685 0.92522 0.95208 0.95665 0.82959 0.84095 0.89010 0.90554 0.90939 0.90900 0.90679 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.35 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.26 -6.05 6.54 56.52 0.37 -5.69 15 7 C -0.51 -14.31 9.65 -34.44 -0.33 -14.64 15 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 15 9 C 0.02 0.48 4.06 -29.04 -0.12 0.36 15 10 C -0.07 -1.44 5.09 -104.49 -0.53 -1.97 15 11 C 0.09 1.76 10.85 -17.53 -0.19 1.57 15 12 N -0.49 -9.50 10.36 -13.22 -0.14 -9.64 15 13 C 0.08 1.37 11.19 -17.52 -0.20 1.18 15 14 C -0.16 -2.68 6.18 -104.26 -0.64 -3.32 15 15 C -0.05 -1.04 6.04 -104.22 -0.63 -1.67 15 16 C -0.08 -1.40 6.38 -26.96 -0.17 -1.57 15 17 C -0.12 -1.59 7.09 -25.17 -0.18 -1.76 15 18 C -0.07 -0.93 6.77 -26.83 -0.18 -1.11 15 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 20 H 0.03 0.69 7.12 -51.93 -0.37 0.32 15 21 H 0.03 0.58 7.37 -51.93 -0.38 0.20 15 22 H 0.15 2.88 8.06 -52.49 -0.42 2.46 15 23 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15 24 H 0.09 1.72 8.14 -51.93 -0.42 1.30 15 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 247.05 15.07 3.72 3.72 Total: -1.00 -30.61 247.05 -7.30 -37.91 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.72 Total: -0.94 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.27 Total: -21.02 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.64 Total: -35.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.61 -7.30 -37.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150176.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.994 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds