Wall clock time and date at job start Mon Mar 30 2020 02:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47213 * 240.00306 * 3 2 1 5 5 H 1.48498 * 109.47399 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46833 * 120.00487 * 3 2 1 7 7 C 1.37874 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.38224 * 120.50701 * 89.99435 * 10 9 7 12 12 N 1.31694 * 120.80045 * 179.97438 * 11 10 9 13 13 C 1.32293 * 122.03217 * 0.02562 * 12 11 10 14 14 C 1.38166 * 120.26679 * 359.97438 * 13 12 11 15 15 C 1.38580 * 120.50426 * 270.01650 * 10 9 7 16 16 C 1.51221 * 109.95640 * 180.02562 * 14 13 12 17 17 C 1.54373 * 105.12011 * 17.12869 * 16 14 13 18 18 C 1.51473 * 130.14425 * 179.97438 * 13 12 11 19 19 H 0.96996 * 120.00408 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47312 * 59.99418 * 9 7 2 21 21 H 1.09001 * 109.47046 * 299.99906 * 9 7 2 22 22 H 1.07999 * 119.59930 * 0.28027 * 11 10 9 23 23 H 1.08003 * 120.71828 * 359.97082 * 15 10 9 24 24 H 1.08997 * 110.31375 * 136.04250 * 16 14 13 25 25 H 1.09001 * 110.31922 * 258.11925 * 16 14 13 26 26 H 1.09005 * 110.81818 * 91.92936 * 17 16 14 27 27 H 1.08993 * 110.82406 * 215.28075 * 17 16 14 28 28 H 1.09000 * 110.29631 * 281.71251 * 18 13 12 29 29 H 1.09001 * 110.29795 * 43.84827 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6865 -4.1778 1.1904 12 7 3.5419 -5.1791 1.1971 13 6 4.0015 -5.7168 0.0792 14 6 3.5881 -5.2335 -1.1474 15 6 2.6878 -4.1790 -1.1945 16 6 4.2532 -6.0125 -2.2599 17 6 4.7773 -7.3015 -1.5913 18 6 4.9767 -6.8575 -0.1269 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 2.3333 -3.7716 2.1267 23 1 2.3498 -3.7839 -2.1412 24 1 3.5284 -6.2569 -3.0364 25 1 5.0796 -5.4401 -2.6812 26 1 4.0381 -8.0999 -1.6565 27 1 5.7218 -7.6128 -2.0374 28 1 5.9993 -6.5131 0.0272 29 1 4.7471 -7.6786 0.5522 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261151934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:09 Heat of formation + Delta-G solvation = 11.896648 kcal Electronic energy + Delta-G solvation = -12321.520967 eV Core-core repulsion = 10208.395744 eV Total energy + Delta-G solvation = -2113.125223 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.10822 -36.11107 -33.58140 -32.01089 -29.80820 -27.82615 -26.42100 -23.29658 -22.72755 -20.60150 -19.85767 -16.39219 -16.10217 -15.76058 -15.16293 -14.66020 -13.69409 -13.12229 -12.79805 -12.71519 -12.25190 -12.13144 -11.70378 -11.59402 -11.23282 -11.08773 -10.83352 -10.74786 -10.58062 -9.85268 -9.60733 -8.81212 -8.64826 -8.44056 -7.83860 -6.09393 -4.14098 1.78142 1.99948 3.29522 3.33681 3.37058 4.33580 4.41026 4.50243 4.74025 5.05005 5.10722 5.25102 5.40256 5.66587 5.78412 5.79561 5.84105 5.90759 6.00174 6.12235 6.22023 6.37265 6.50570 6.84644 6.93644 7.37623 7.51106 7.65027 7.85456 8.23897 8.64138 8.90407 9.50265 11.00360 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.056231 B = 0.007525 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.825604 B = 3719.941820 C = 3798.633579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.054 3.946 10 C -0.080 4.080 11 C 0.092 3.908 12 N -0.484 5.484 13 C 0.078 3.922 14 C -0.154 4.154 15 C -0.074 4.074 16 C -0.076 4.076 17 C -0.118 4.118 18 C -0.062 4.062 19 H 0.264 0.736 20 H 0.031 0.969 21 H 0.033 0.967 22 H 0.153 0.847 23 H 0.126 0.874 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 -10.962 -3.298 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.082 4.082 11 C -0.065 4.065 12 N -0.192 5.192 13 C -0.060 4.060 14 C -0.156 4.156 15 C -0.100 4.100 16 C -0.113 4.113 17 C -0.156 4.156 18 C -0.100 4.100 19 H 0.073 0.927 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.171 0.829 23 H 0.144 0.856 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.238 -11.174 -2.487 13.544 hybrid contribution 0.083 1.481 -0.777 1.674 sum 7.320 -9.694 -3.264 12.578 Atomic orbital electron populations 1.69940 1.06029 1.27079 1.50093 1.24997 0.94894 0.99265 0.94985 0.86574 0.79538 0.82683 0.78785 1.20168 1.21145 1.20084 1.20988 0.92964 0.89801 1.51626 0.92600 1.18280 0.92276 0.89089 0.98717 1.21602 0.97571 0.96388 0.92656 1.22525 0.93731 0.91897 0.98331 1.66764 1.10786 1.10430 1.31264 1.21556 0.97928 0.97833 0.88689 1.21333 0.99213 0.98166 0.96913 1.20993 0.95723 0.94211 0.99028 1.20891 0.99445 0.94952 0.96038 1.22279 1.01326 0.97248 0.94743 1.20823 0.97397 0.95082 0.96731 0.92669 0.95093 0.94877 0.82933 0.85582 0.90930 0.90449 0.91044 0.90534 0.90224 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.52 -14.36 9.09 -34.44 -0.31 -14.67 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.05 1.37 5.13 -29.04 -0.15 1.22 15 10 C -0.08 -1.78 5.09 -104.50 -0.53 -2.32 15 11 C 0.09 1.95 10.87 -17.62 -0.19 1.76 15 12 N -0.48 -9.83 10.35 -9.19 -0.10 -9.92 15 13 C 0.08 1.40 7.32 -82.04 -0.60 0.80 15 14 C -0.15 -2.70 6.16 -104.21 -0.64 -3.35 15 15 C -0.07 -1.47 9.86 -39.27 -0.39 -1.86 15 16 C -0.08 -0.97 6.77 -26.91 -0.18 -1.16 15 17 C -0.12 -1.27 7.08 -25.32 -0.18 -1.45 15 18 C -0.06 -0.82 6.77 -26.81 -0.18 -1.00 15 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.03 0.82 8.10 -51.93 -0.42 0.40 15 21 H 0.03 0.87 8.10 -51.93 -0.42 0.45 15 22 H 0.15 3.04 8.06 -52.49 -0.42 2.62 15 23 H 0.13 2.38 8.06 -52.48 -0.42 1.96 15 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 251.29 15.07 3.79 3.79 Total: -1.00 -30.22 251.29 -7.81 -38.03 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.76 Total: -2.54 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -3.45 Total: -20.43 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.64 Total: -35.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.22 -7.81 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.927 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds