Wall clock time and date at job start Mon Mar 30 2020 02:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99677 * 2 1 4 4 H 1.48502 * 109.47213 * 240.00306 * 3 2 1 5 5 H 1.48498 * 109.47399 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46833 * 120.00487 * 3 2 1 7 7 C 1.37874 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.38224 * 120.50701 * 89.99435 * 10 9 7 12 12 N 1.31694 * 120.80045 * 179.97438 * 11 10 9 13 13 C 1.32293 * 122.03217 * 0.02562 * 12 11 10 14 14 C 1.38166 * 120.26679 * 359.97438 * 13 12 11 15 15 C 1.38580 * 120.50426 * 270.01650 * 10 9 7 16 16 C 1.51221 * 109.95640 * 180.02562 * 14 13 12 17 17 C 1.54373 * 105.12011 * 17.12869 * 16 14 13 18 18 C 1.51473 * 130.14425 * 179.97438 * 13 12 11 19 19 H 0.96996 * 120.00408 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47312 * 59.99418 * 9 7 2 21 21 H 1.09001 * 109.47046 * 299.99906 * 9 7 2 22 22 H 1.07999 * 119.59930 * 0.28027 * 11 10 9 23 23 H 1.08003 * 120.71828 * 359.97082 * 15 10 9 24 24 H 1.08997 * 110.31375 * 136.04250 * 16 14 13 25 25 H 1.09001 * 110.31922 * 258.11925 * 16 14 13 26 26 H 1.09005 * 110.81818 * 91.92936 * 17 16 14 27 27 H 1.08993 * 110.82406 * 215.28075 * 17 16 14 28 28 H 1.09000 * 110.29631 * 281.71251 * 18 13 12 29 29 H 1.09001 * 110.29795 * 43.84827 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6865 -4.1778 1.1904 12 7 3.5419 -5.1791 1.1971 13 6 4.0015 -5.7168 0.0792 14 6 3.5881 -5.2335 -1.1474 15 6 2.6878 -4.1790 -1.1945 16 6 4.2532 -6.0125 -2.2599 17 6 4.7773 -7.3015 -1.5913 18 6 4.9767 -6.8575 -0.1269 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 2.3333 -3.7716 2.1267 23 1 2.3498 -3.7839 -2.1412 24 1 3.5284 -6.2569 -3.0364 25 1 5.0796 -5.4401 -2.6812 26 1 4.0381 -8.0999 -1.6565 27 1 5.7218 -7.6128 -2.0374 28 1 5.9993 -6.5131 0.0272 29 1 4.7471 -7.6786 0.5522 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261151934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:09 Heat of formation + Delta-G solvation = -5.576387 kcal Electronic energy + Delta-G solvation = -12322.278655 eV Core-core repulsion = 10208.395744 eV Total energy + Delta-G solvation = -2113.882911 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.54349 -37.42469 -35.48820 -33.79980 -31.36736 -29.17318 -28.05213 -25.09044 -24.26921 -21.84189 -21.31172 -18.56211 -17.56367 -17.11720 -16.59129 -16.37149 -15.18978 -14.69390 -14.29612 -14.05973 -13.74409 -13.64055 -13.52720 -13.07359 -12.82429 -12.62699 -12.42163 -12.02910 -11.85530 -11.71549 -11.60584 -10.65542 -10.37334 -10.16687 -9.39173 -8.24327 -6.38146 0.26420 0.42658 1.38455 1.40774 1.49307 2.37127 2.89885 3.06839 3.14343 3.60019 3.95455 4.12308 4.20353 4.22843 4.36522 4.46076 4.75249 4.88786 4.89420 4.97700 5.07068 5.19516 5.23881 5.28033 5.35221 5.39387 5.67771 5.72168 5.89606 6.11905 6.72577 7.10165 7.30777 8.85049 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.056231 B = 0.007525 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.825604 B = 3719.941820 C = 3798.633579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.065 3.935 10 C -0.108 4.108 11 C 0.078 3.922 12 N -0.499 5.499 13 C 0.070 3.930 14 C -0.152 4.152 15 C -0.085 4.085 16 C -0.076 4.076 17 C -0.105 4.105 18 C -0.063 4.063 19 H 0.267 0.733 20 H 0.010 0.990 21 H 0.010 0.990 22 H 0.151 0.849 23 H 0.130 0.870 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -12.142 -4.422 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.110 4.110 11 C -0.078 4.078 12 N -0.207 5.207 13 C -0.068 4.068 14 C -0.154 4.154 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.143 4.143 18 C -0.100 4.100 19 H 0.076 0.924 20 H 0.028 0.972 21 H 0.029 0.971 22 H 0.168 0.832 23 H 0.147 0.853 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.481 -12.364 -3.608 15.993 hybrid contribution -0.587 1.742 -0.450 1.892 sum 8.894 -10.622 -4.058 14.436 Atomic orbital electron populations 1.70056 1.07585 1.28204 1.50757 1.25886 0.95772 1.02990 0.94322 0.85494 0.78331 0.78097 0.79114 1.19252 1.20294 1.19454 1.21273 0.92877 0.91202 1.51785 0.93135 1.17990 0.92486 0.90286 0.96497 1.21300 0.98632 0.96697 0.94349 1.22457 0.94628 0.92760 0.97939 1.66832 1.10914 1.10314 1.32676 1.22606 0.97690 0.98409 0.88125 1.21876 0.97621 0.96871 0.99043 1.21118 0.96509 0.95201 0.98246 1.21078 0.99903 0.95438 0.94899 1.22333 1.03370 0.96143 0.92432 1.21060 0.96623 0.93445 0.98912 0.92369 0.97196 0.97137 0.83200 0.85253 0.89369 0.88896 0.89970 0.87004 0.88641 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.22 15 2 C 0.01 0.52 5.46 84.65 0.46 0.98 15 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.53 -30.70 9.09 25.60 0.23 -30.47 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.06 3.51 5.13 29.10 0.15 3.66 15 10 C -0.11 -4.99 5.09 -19.79 -0.10 -5.09 15 11 C 0.08 3.43 10.87 84.71 0.92 4.35 15 12 N -0.50 -20.18 10.35 -182.99 -1.89 -22.07 15 13 C 0.07 2.39 7.32 42.72 0.31 2.71 15 14 C -0.15 -5.08 6.16 -19.60 -0.12 -5.20 15 15 C -0.09 -3.43 9.86 22.47 0.22 -3.20 15 16 C -0.08 -1.65 6.77 30.48 0.21 -1.45 15 17 C -0.11 -1.72 7.08 31.51 0.22 -1.50 15 18 C -0.06 -1.41 6.77 30.54 0.21 -1.20 15 19 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 20 H 0.01 0.55 8.10 -2.39 -0.02 0.53 15 21 H 0.01 0.59 8.10 -2.39 -0.02 0.57 15 22 H 0.15 6.37 8.06 -2.91 -0.02 6.35 15 23 H 0.13 4.97 8.06 -2.91 -0.02 4.95 15 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.08 1.22 8.14 -2.38 -0.02 1.20 15 27 H 0.11 1.15 8.14 -2.39 -0.02 1.13 15 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 Total: -1.00 -66.71 251.29 4.26 -62.45 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.13 Total: 4.95 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 2.71 Total: -36.41 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.61 Total: -77.30 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.71 4.26 -62.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.873 kcal (2) G-P(sol) polarization free energy of solvation -66.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds