Wall clock time and date at job start Mon Mar 30 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48496 * 109.47325 * 269.99684 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99931 * 3 2 1 6 6 H 1.48500 * 109.47201 * 149.99969 * 3 2 1 7 7 C 1.37882 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99859 * 179.97438 * 7 2 1 10 10 C 1.50692 * 109.47428 * 180.02562 * 9 7 2 11 11 C 1.35193 * 119.71762 * 85.00056 * 10 9 7 12 12 C 1.40268 * 120.21498 * 180.28132 * 11 10 9 13 13 C 1.36193 * 119.62309 * 359.40616 * 12 11 10 14 14 C 1.40653 * 119.26511 * 0.64353 * 13 12 11 15 15 N 1.32847 * 132.89181 * 179.67339 * 14 13 12 16 16 C 1.32513 * 109.67617 * 179.97438 * 15 14 13 17 17 N 1.31247 * 109.64046 * 0.02562 * 16 15 14 18 18 N 1.35932 * 119.72039 * 265.02999 * 10 9 7 19 19 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46979 * 60.00315 * 9 7 2 21 21 H 1.08998 * 109.47630 * 300.00365 * 9 7 2 22 22 H 1.08002 * 119.88722 * 0.02562 * 11 10 9 23 23 H 1.08001 * 120.18924 * 179.72323 * 12 11 10 24 24 H 1.08004 * 120.36859 * 180.26894 * 13 12 11 25 25 H 1.08000 * 125.17260 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6148 0.0001 11 6 4.1404 -3.2810 -1.1695 12 6 4.6014 -4.6057 -1.1810 13 6 4.9326 -5.2135 -0.0080 14 6 4.7926 -4.5032 1.1979 15 7 5.0230 -4.8217 2.4668 16 6 4.7304 -3.7905 3.2459 17 7 4.3072 -2.7886 2.5112 18 7 4.3354 -3.2158 1.1762 19 1 -0.4850 0.8400 -0.0004 20 1 3.8751 -0.6797 0.8896 21 1 3.8745 -0.6808 -0.8904 22 1 3.8817 -2.7930 -2.0976 23 1 4.6980 -5.1390 -2.1151 24 1 5.2929 -6.2316 -0.0033 25 1 4.8249 -3.7770 4.3217 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156523.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:40 Heat of formation + Delta-G solvation = 112.749753 kcal Electronic energy + Delta-G solvation = -12372.022080 eV Core-core repulsion = 10159.729833 eV Total energy + Delta-G solvation = -2212.292248 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.18381 -37.65104 -34.03036 -32.62809 -30.83140 -30.17204 -27.86886 -23.88424 -23.03046 -22.44490 -20.17951 -17.43228 -17.04847 -16.47655 -15.58295 -15.55758 -14.47063 -13.87685 -13.50370 -12.66410 -12.40852 -12.15598 -11.94201 -11.90532 -11.27959 -10.80551 -10.76060 -10.24636 -10.05526 -9.64347 -9.55344 -9.10955 -8.72286 -7.63151 -6.21439 -4.23784 1.17269 1.42812 2.62036 3.18575 3.20439 3.28983 3.31799 3.82451 4.29391 4.36334 4.68261 5.07551 5.16204 5.26880 5.34866 5.75156 5.80236 6.26269 6.41639 6.57039 6.62927 6.72243 6.83975 6.94523 7.39530 7.43640 8.26692 8.40075 8.78262 9.35556 10.90921 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.041698 B = 0.010752 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.338415 B = 2603.574168 C = 2927.428752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.015 3.985 10 C 0.207 3.793 11 C -0.185 4.185 12 C -0.044 4.044 13 C -0.146 4.146 14 C 0.279 3.721 15 N -0.566 5.566 16 C 0.220 3.780 17 N -0.328 5.328 18 N -0.277 5.277 19 H 0.267 0.733 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.158 0.842 23 H 0.144 0.856 24 H 0.148 0.852 25 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 -6.106 -1.779 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.023 4.023 10 C 0.097 3.903 11 C -0.208 4.208 12 C -0.069 4.069 13 C -0.168 4.168 14 C 0.026 3.974 15 N -0.297 5.297 16 C -0.081 4.081 17 N -0.157 5.157 18 N -0.051 5.051 19 H 0.077 0.923 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.176 0.824 23 H 0.161 0.839 24 H 0.165 0.835 25 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.457 -5.597 -1.154 11.050 hybrid contribution 0.187 0.797 -0.038 0.820 sum 9.645 -4.800 -1.193 10.839 Atomic orbital electron populations 1.69872 1.06256 1.27341 1.49446 1.24904 0.94766 0.99006 0.93952 0.86807 0.80567 0.83495 0.78754 1.19830 1.20869 1.18829 1.20667 0.87005 0.95060 1.52977 0.90800 1.19019 0.98474 0.85482 0.99320 1.20910 0.90471 0.97883 0.81019 1.20725 1.07221 0.95389 0.97426 1.21222 0.93400 0.94261 0.98048 1.20053 1.07865 1.01100 0.87768 1.21820 0.96195 0.84638 0.94739 1.70804 1.31011 1.29572 0.98312 1.26083 0.94416 0.86408 1.01228 1.78608 1.29770 1.23158 0.84196 1.47624 1.40092 1.11013 1.06364 0.92256 0.93609 0.93605 0.82430 0.83861 0.83460 0.76467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 3 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 15 7 C -0.52 -14.39 9.65 -34.44 -0.33 -14.72 15 8 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 9 C 0.01 0.35 4.22 -29.04 -0.12 0.22 15 10 C 0.21 4.30 6.00 -81.86 -0.49 3.80 15 11 C -0.19 -3.07 9.62 -39.90 -0.38 -3.46 15 12 C -0.04 -0.59 10.07 -39.55 -0.40 -0.99 15 13 C -0.15 -2.19 10.11 -39.41 -0.40 -2.59 15 14 C 0.28 5.34 7.88 -156.32 -1.23 4.11 15 15 N -0.57 -10.82 11.25 -14.00 -0.16 -10.98 15 16 C 0.22 3.99 12.98 -92.00 -1.19 2.80 15 17 N -0.33 -7.11 12.50 29.25 0.37 -6.75 15 18 N -0.28 -5.92 3.89 -8.62 -0.03 -5.95 15 19 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 20 H 0.05 1.13 7.03 -51.92 -0.37 0.77 15 21 H 0.05 0.98 7.53 -51.93 -0.39 0.59 15 22 H 0.16 2.29 8.06 -52.49 -0.42 1.87 15 23 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 24 H 0.15 1.75 8.06 -52.48 -0.42 1.33 15 25 H 0.22 2.84 8.06 -52.49 -0.42 2.42 15 LS Contribution 228.90 15.07 3.45 3.45 Total: -1.00 -32.89 228.90 -6.95 -39.85 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -2.03 Total: -1.03 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -4.65 Total: -8.75 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.95 Total: -49.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.89 -6.95 -39.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156523.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.595 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds