Wall clock time and date at job start Mon Mar 30 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48496 * 109.47325 * 269.99684 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99931 * 3 2 1 6 6 H 1.48500 * 109.47201 * 149.99969 * 3 2 1 7 7 C 1.37882 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99859 * 179.97438 * 7 2 1 10 10 C 1.50692 * 109.47428 * 180.02562 * 9 7 2 11 11 C 1.35193 * 119.71762 * 85.00056 * 10 9 7 12 12 C 1.40268 * 120.21498 * 180.28132 * 11 10 9 13 13 C 1.36193 * 119.62309 * 359.40616 * 12 11 10 14 14 C 1.40653 * 119.26511 * 0.64353 * 13 12 11 15 15 N 1.32847 * 132.89181 * 179.67339 * 14 13 12 16 16 C 1.32513 * 109.67617 * 179.97438 * 15 14 13 17 17 N 1.31247 * 109.64046 * 0.02562 * 16 15 14 18 18 N 1.35932 * 119.72039 * 265.02999 * 10 9 7 19 19 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46979 * 60.00315 * 9 7 2 21 21 H 1.08998 * 109.47630 * 300.00365 * 9 7 2 22 22 H 1.08002 * 119.88722 * 0.02562 * 11 10 9 23 23 H 1.08001 * 120.18924 * 179.72323 * 12 11 10 24 24 H 1.08004 * 120.36859 * 180.26894 * 13 12 11 25 25 H 1.08000 * 125.17260 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6148 0.0001 11 6 4.1404 -3.2810 -1.1695 12 6 4.6014 -4.6057 -1.1810 13 6 4.9326 -5.2135 -0.0080 14 6 4.7926 -4.5032 1.1979 15 7 5.0230 -4.8217 2.4668 16 6 4.7304 -3.7905 3.2459 17 7 4.3072 -2.7886 2.5112 18 7 4.3354 -3.2158 1.1762 19 1 -0.4850 0.8400 -0.0004 20 1 3.8751 -0.6797 0.8896 21 1 3.8745 -0.6808 -0.8904 22 1 3.8817 -2.7930 -2.0976 23 1 4.6980 -5.1390 -2.1151 24 1 5.2929 -6.2316 -0.0033 25 1 4.8249 -3.7770 4.3217 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156523.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:40 Heat of formation + Delta-G solvation = 91.593742 kcal Electronic energy + Delta-G solvation = -12372.939474 eV Core-core repulsion = 10159.729833 eV Total energy + Delta-G solvation = -2213.209641 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.58336 -39.02655 -35.69065 -34.41671 -32.45622 -31.62842 -29.50245 -25.55912 -24.44744 -23.94430 -21.74866 -19.15218 -18.78955 -17.85640 -17.08326 -16.82523 -16.32919 -15.35185 -15.05897 -14.40007 -14.07227 -13.62179 -13.54376 -13.29577 -12.87135 -12.53860 -12.23579 -11.88651 -11.84789 -11.64089 -11.11460 -10.85219 -10.50147 -9.04041 -8.37814 -6.45399 -0.13376 0.08173 1.23024 1.32467 1.36861 1.47120 1.79041 2.29318 2.51008 2.97070 3.08990 3.33905 3.90324 3.97606 4.18449 4.38451 4.59619 4.83184 4.90889 5.09437 5.18640 5.32643 5.39348 5.48981 5.59700 5.94767 6.08947 6.57182 6.97521 7.18076 8.78447 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.041698 B = 0.010752 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.338415 B = 2603.574168 C = 2927.428752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.248 1.248 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.522 4.522 8 H 0.026 0.974 9 C 0.025 3.975 10 C 0.150 3.850 11 C -0.163 4.163 12 C -0.026 4.026 13 C -0.138 4.138 14 C 0.256 3.744 15 N -0.580 5.580 16 C 0.224 3.776 17 N -0.385 5.385 18 N -0.291 5.291 19 H 0.271 0.729 20 H 0.025 0.975 21 H 0.069 0.931 22 H 0.180 0.820 23 H 0.202 0.798 24 H 0.185 0.815 25 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.604 -6.868 -3.353 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.172 1.172 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.560 4.560 8 H 0.045 0.955 9 C -0.013 4.013 10 C 0.041 3.959 11 C -0.185 4.185 12 C -0.051 4.051 13 C -0.160 4.160 14 C 0.005 3.995 15 N -0.312 5.312 16 C -0.076 4.076 17 N -0.216 5.216 18 N -0.066 5.066 19 H 0.080 0.920 20 H 0.044 0.956 21 H 0.087 0.913 22 H 0.197 0.803 23 H 0.219 0.781 24 H 0.202 0.798 25 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 11.370 -6.377 -2.746 13.322 hybrid contribution -0.414 0.853 0.411 1.033 sum 10.956 -5.524 -2.335 12.490 Atomic orbital electron populations 1.70027 1.08270 1.28571 1.51323 1.25883 0.95587 1.03250 0.93464 0.85677 0.79041 0.78077 0.80025 1.17244 1.20939 1.18089 1.20857 0.89676 0.93225 1.52240 0.95522 1.18746 0.95263 0.88103 0.99207 1.20878 0.94952 0.97649 0.82462 1.21242 1.04048 0.96590 0.96594 1.21796 0.90783 0.92672 0.99864 1.20711 1.06324 1.02361 0.86556 1.22657 0.96350 0.84376 0.96141 1.70821 1.31871 1.29870 0.98642 1.26847 0.92690 0.85381 1.02715 1.78492 1.32378 1.25486 0.85211 1.47653 1.40806 1.11889 1.06217 0.92044 0.95631 0.91272 0.80295 0.78053 0.79782 0.72643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.96 21.45 0.30 -58.03 15 2 C 0.02 0.95 5.47 84.66 0.46 1.41 15 3 Si 0.95 43.18 27.47 68.60 1.88 45.07 15 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.26 -11.30 6.54 99.48 0.65 -10.65 15 7 C -0.52 -29.85 9.65 25.60 0.25 -29.60 15 8 H 0.03 1.71 7.98 -2.91 -0.02 1.69 15 9 C 0.02 1.16 4.22 29.10 0.12 1.28 15 10 C 0.15 6.17 6.00 41.22 0.25 6.42 15 11 C -0.16 -4.96 9.62 22.06 0.21 -4.75 15 12 C -0.03 -0.58 10.07 22.29 0.22 -0.35 15 13 C -0.14 -3.64 10.11 22.38 0.23 -3.41 15 14 C 0.26 9.50 7.88 134.09 1.06 10.55 15 15 N -0.58 -21.73 11.25 -198.19 -2.23 -23.96 15 16 C 0.22 8.14 12.98 180.83 2.35 10.48 15 17 N -0.38 -17.12 12.50 -61.38 -0.77 -17.89 15 18 N -0.29 -12.53 3.89 -181.17 -0.71 -13.24 15 19 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 20 H 0.03 1.29 7.03 -2.38 -0.02 1.27 15 21 H 0.07 2.86 7.53 -2.39 -0.02 2.84 15 22 H 0.18 4.57 8.06 -2.91 -0.02 4.54 15 23 H 0.20 2.19 8.06 -2.91 -0.02 2.16 15 24 H 0.18 3.44 8.06 -2.91 -0.02 3.42 15 25 H 0.26 6.48 8.06 -2.91 -0.02 6.46 15 Total: -1.00 -76.00 228.90 4.77 -71.23 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.14 Total: 4.78 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.15 Total: -7.96 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.40 Total: -113.12 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.07 kcal Total: -76.00 4.77 -71.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156523.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.824 kcal (2) G-P(sol) polarization free energy of solvation -76.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds