Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28809 * 124.19735 * 2 1 4 4 C 1.32536 * 108.58700 * 180.16102 * 3 2 1 5 5 C 1.40726 * 135.23469 * 179.90218 * 4 3 2 6 6 C 1.37529 * 120.77268 * 179.66202 * 5 4 3 7 7 C 1.38368 * 121.88337 * 0.05052 * 6 5 4 8 8 C 1.40469 * 120.53076 * 359.95277 * 7 6 5 9 9 C 1.40276 * 120.70891 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99479 * 204.37322 * 9 8 7 11 11 C 1.40158 * 120.00059 * 24.37618 * 9 8 7 12 12 N 1.30744 * 120.00440 * 17.80926 * 11 9 8 13 13 Si 1.86808 * 119.99917 * 197.81382 * 11 9 8 14 14 H 1.48499 * 109.47308 * 89.99731 * 13 11 9 15 15 H 1.48502 * 109.46629 * 209.99882 * 13 11 9 16 16 H 1.48494 * 109.46667 * 329.99679 * 13 11 9 17 17 C 1.42422 * 105.30859 * 359.62619 * 4 3 2 18 18 N 1.28812 * 124.19262 * 179.72853 * 2 1 3 19 19 H 1.09001 * 109.46611 * 270.27539 * 1 2 3 20 20 H 1.08992 * 109.47365 * 30.27217 * 1 2 3 21 21 H 1.09003 * 109.47322 * 150.28095 * 1 2 3 22 22 H 1.08007 * 119.61577 * 359.69431 * 5 4 3 23 23 H 1.07995 * 119.06527 * 180.02562 * 6 5 4 24 24 H 1.08000 * 119.73328 * 179.97438 * 7 6 5 25 25 H 0.96994 * 120.00373 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1890 1.0654 0.0000 4 6 3.4655 0.7087 -0.0035 5 6 4.6944 1.3943 -0.0070 6 6 5.8846 0.7052 -0.0033 7 6 5.9283 -0.6778 0.0029 8 6 4.7416 -1.4293 0.0066 9 6 4.7815 -2.8314 0.0134 10 1 3.9453 -3.3973 -0.3698 11 6 5.9067 -3.4980 0.5176 12 7 6.7528 -2.8632 1.2860 13 14 6.1975 -5.2934 0.0914 14 1 7.0087 -5.3827 -1.1492 15 1 6.9224 -5.9554 1.2057 16 1 4.8924 -5.9693 -0.1208 17 6 3.4580 -0.7154 0.0032 18 7 2.1889 -1.0655 0.0050 19 1 -0.3632 0.0049 1.0277 20 1 -0.3634 0.8875 -0.5180 21 1 -0.3634 -0.8925 -0.5095 22 1 4.7031 2.4743 -0.0121 23 1 6.8116 1.2592 -0.0057 24 1 6.8826 -1.1835 0.0052 25 1 7.5317 -3.3244 1.6346 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261185628.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = 119.623044 kcal Electronic energy + Delta-G solvation = -12390.531010 eV Core-core repulsion = 10178.536810 eV Total energy + Delta-G solvation = -2211.994200 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.13782 -36.37717 -33.89911 -31.84730 -31.51999 -29.17675 -26.95608 -25.21572 -22.08198 -21.52071 -19.61146 -17.40982 -16.14182 -16.06743 -15.81558 -15.32012 -14.04480 -13.06084 -12.92461 -12.71773 -12.60027 -11.79520 -11.62269 -11.32254 -10.86768 -10.65649 -10.27297 -10.11200 -9.70747 -9.60632 -9.29841 -9.16579 -7.61692 -7.11687 -6.90666 -4.39838 1.93352 2.89744 2.96569 3.00377 3.21980 3.30220 3.58102 3.74904 4.49936 4.88735 5.38537 5.50408 5.57052 5.62028 6.15408 6.41245 6.75237 6.81513 6.91792 7.13805 7.42295 7.69084 7.69926 7.88467 8.10636 8.17207 8.47833 8.61879 8.74897 9.50381 9.85270 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.039787 B = 0.011449 C = 0.009127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.580945 B = 2445.099538 C = 3067.041171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.160 5.160 3 N -0.359 5.359 4 C 0.087 3.913 5 C -0.275 4.275 6 C -0.017 4.017 7 C -0.265 4.265 8 C 0.165 3.835 9 C -0.402 4.402 10 H 0.089 0.911 11 C 0.069 3.931 12 N -0.751 5.751 13 Si 0.919 3.081 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.258 1.258 17 C -0.003 4.003 18 N -0.284 5.284 19 H 0.078 0.922 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.124 0.876 25 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -0.813 -1.381 4.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.058 5.058 3 N -0.207 5.207 4 C -0.062 4.062 5 C -0.299 4.299 6 C -0.039 4.039 7 C -0.288 4.288 8 C 0.159 3.841 9 C -0.431 4.431 10 H 0.107 0.893 11 C -0.154 4.154 12 N -0.373 5.373 13 Si 0.742 3.258 14 H -0.187 1.187 15 H -0.199 1.199 16 H -0.182 1.182 17 C -0.158 4.158 18 N -0.132 5.132 19 H 0.096 0.904 20 H 0.111 0.889 21 H 0.112 0.888 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.141 0.859 25 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.149 -0.805 -1.217 5.351 hybrid contribution 0.934 -0.649 0.016 1.138 sum -4.214 -1.454 -1.201 4.617 Atomic orbital electron populations 1.21796 0.72098 1.04641 1.03754 1.47848 1.07942 1.00012 1.50009 1.74252 1.03225 1.13274 1.29953 1.20300 0.91222 0.93244 1.01413 1.18946 0.88245 0.96811 1.25885 1.20394 0.95118 0.94608 0.93770 1.20681 0.97201 0.91812 1.19154 1.17594 0.85690 0.92255 0.88581 1.19742 1.01211 0.91761 1.30370 0.89286 1.26148 0.94745 1.01800 0.92731 1.69825 1.09452 1.39037 1.19036 0.86117 0.79948 0.80403 0.79356 1.18715 1.19856 1.18151 1.22080 0.91357 0.93879 1.08513 1.73768 1.04091 1.14181 1.21111 0.90384 0.88868 0.88821 0.88913 0.88762 0.85862 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.68 11.54 59.85 0.69 2.37 15 2 N -0.16 -3.54 4.35 -16.63 -0.07 -3.62 15 3 N -0.36 -8.79 12.10 32.20 0.39 -8.40 15 4 C 0.09 2.30 7.41 -85.01 -0.63 1.67 15 5 C -0.27 -6.84 10.08 -38.90 -0.39 -7.23 15 6 C -0.02 -0.40 9.91 -39.79 -0.39 -0.79 15 7 C -0.27 -6.92 8.70 -38.69 -0.34 -7.26 15 8 C 0.17 4.52 5.72 -104.80 -0.60 3.92 15 9 C -0.40 -10.47 9.08 -38.10 -0.35 -10.81 15 10 H 0.09 2.27 7.91 -52.49 -0.42 1.85 15 11 C 0.07 1.64 5.15 -17.29 -0.09 1.55 15 12 N -0.75 -18.27 10.96 55.56 0.61 -17.66 15 13 Si 0.92 17.49 29.60 -169.99 -5.03 12.46 15 14 H -0.26 -4.91 7.11 56.52 0.40 -4.50 15 15 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 16 H -0.26 -4.91 7.11 56.52 0.40 -4.50 15 17 C 0.00 -0.09 7.38 -82.85 -0.61 -0.71 15 18 N -0.28 -7.12 12.05 33.39 0.40 -6.72 15 19 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 20 H 0.09 1.11 8.14 -51.93 -0.42 0.68 15 21 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.09 2.12 8.06 -52.48 -0.42 1.69 15 23 H 0.09 1.95 8.06 -52.49 -0.42 1.53 15 24 H 0.12 3.20 6.14 -52.49 -0.32 2.88 15 25 H 0.29 6.22 8.29 -40.82 -0.34 5.89 15 LS Contribution 228.22 15.07 3.44 3.44 Total: -1.00 -30.73 228.22 -4.96 -35.69 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -1.99 Total: 2.11 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.71 Total: -17.30 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 1.33 Total: -36.40 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.73 -4.96 -35.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261185628.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.309 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds