Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28809 * 124.19735 * 2 1 4 4 C 1.32536 * 108.58700 * 180.16102 * 3 2 1 5 5 C 1.40726 * 135.23469 * 179.90218 * 4 3 2 6 6 C 1.37529 * 120.77268 * 179.66202 * 5 4 3 7 7 C 1.38368 * 121.88337 * 0.05052 * 6 5 4 8 8 C 1.40469 * 120.53076 * 359.95277 * 7 6 5 9 9 C 1.40276 * 120.70891 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99479 * 204.37322 * 9 8 7 11 11 C 1.40158 * 120.00059 * 24.37618 * 9 8 7 12 12 N 1.30744 * 120.00440 * 17.80926 * 11 9 8 13 13 Si 1.86808 * 119.99917 * 197.81382 * 11 9 8 14 14 H 1.48499 * 109.47308 * 89.99731 * 13 11 9 15 15 H 1.48502 * 109.46629 * 209.99882 * 13 11 9 16 16 H 1.48494 * 109.46667 * 329.99679 * 13 11 9 17 17 C 1.42422 * 105.30859 * 359.62619 * 4 3 2 18 18 N 1.28812 * 124.19262 * 179.72853 * 2 1 3 19 19 H 1.09001 * 109.46611 * 270.27539 * 1 2 3 20 20 H 1.08992 * 109.47365 * 30.27217 * 1 2 3 21 21 H 1.09003 * 109.47322 * 150.28095 * 1 2 3 22 22 H 1.08007 * 119.61577 * 359.69431 * 5 4 3 23 23 H 1.07995 * 119.06527 * 180.02562 * 6 5 4 24 24 H 1.08000 * 119.73328 * 179.97438 * 7 6 5 25 25 H 0.96994 * 120.00373 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1890 1.0654 0.0000 4 6 3.4655 0.7087 -0.0035 5 6 4.6944 1.3943 -0.0070 6 6 5.8846 0.7052 -0.0033 7 6 5.9283 -0.6778 0.0029 8 6 4.7416 -1.4293 0.0066 9 6 4.7815 -2.8314 0.0134 10 1 3.9453 -3.3973 -0.3698 11 6 5.9067 -3.4980 0.5176 12 7 6.7528 -2.8632 1.2860 13 14 6.1975 -5.2934 0.0914 14 1 7.0087 -5.3827 -1.1492 15 1 6.9224 -5.9554 1.2057 16 1 4.8924 -5.9693 -0.1208 17 6 3.4580 -0.7154 0.0032 18 7 2.1889 -1.0655 0.0050 19 1 -0.3632 0.0049 1.0277 20 1 -0.3634 0.8875 -0.5180 21 1 -0.3634 -0.8925 -0.5095 22 1 4.7031 2.4743 -0.0121 23 1 6.8116 1.2592 -0.0057 24 1 6.8826 -1.1835 0.0052 25 1 7.5317 -3.3244 1.6346 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261185628.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = 99.262228 kcal Electronic energy + Delta-G solvation = -12391.413921 eV Core-core repulsion = 10178.536810 eV Total energy + Delta-G solvation = -2212.877111 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.00048 -38.25262 -35.72945 -33.56880 -33.33057 -31.08724 -28.59977 -27.08768 -23.82477 -23.43489 -21.49086 -19.29955 -17.97579 -17.84972 -17.55396 -17.05037 -15.83304 -14.88592 -14.65867 -14.08879 -13.81143 -13.48102 -13.45220 -13.01476 -12.67134 -12.25298 -12.03351 -11.96034 -11.60481 -11.51070 -11.20435 -10.98090 -9.48254 -8.98197 -8.77332 -6.34426 0.07536 1.28530 1.35024 1.40620 1.55026 1.71048 1.77017 2.16779 2.64573 3.21208 3.55428 4.23344 4.29872 4.31988 4.51973 4.58946 4.88631 4.97614 5.02830 5.21336 5.50189 5.74050 5.85914 6.04166 6.20369 6.24418 6.55965 6.68575 6.81961 7.59324 8.10429 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.039787 B = 0.011449 C = 0.009127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.580945 B = 2445.099538 C = 3067.041171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.140 5.140 3 N -0.358 5.358 4 C 0.056 3.944 5 C -0.283 4.283 6 C -0.019 4.019 7 C -0.283 4.283 8 C 0.137 3.863 9 C -0.432 4.432 10 H 0.082 0.918 11 C 0.034 3.966 12 N -0.778 5.778 13 Si 0.995 3.005 14 H -0.254 1.254 15 H -0.259 1.259 16 H -0.259 1.259 17 C -0.044 4.044 18 N -0.293 5.293 19 H 0.104 0.896 20 H 0.121 0.879 21 H 0.118 0.882 22 H 0.111 0.889 23 H 0.127 0.873 24 H 0.118 0.882 25 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -1.366 -1.448 4.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.041 5.041 3 N -0.208 5.208 4 C -0.091 4.091 5 C -0.307 4.307 6 C -0.041 4.041 7 C -0.306 4.306 8 C 0.130 3.870 9 C -0.460 4.460 10 H 0.101 0.899 11 C -0.187 4.187 12 N -0.400 5.400 13 Si 0.814 3.186 14 H -0.178 1.178 15 H -0.183 1.183 16 H -0.182 1.182 17 C -0.196 4.196 18 N -0.144 5.144 19 H 0.123 0.877 20 H 0.140 0.860 21 H 0.136 0.864 22 H 0.129 0.871 23 H 0.145 0.855 24 H 0.136 0.864 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.695 -1.333 -1.277 5.987 hybrid contribution 0.925 -0.394 0.066 1.008 sum -4.770 -1.727 -1.211 5.215 Atomic orbital electron populations 1.22534 0.67858 1.07349 1.06368 1.48668 1.10126 0.98855 1.46483 1.74195 1.02773 1.14073 1.29795 1.20665 0.92353 0.93366 1.02689 1.19268 0.88135 0.97793 1.25500 1.20679 0.96398 0.94135 0.92907 1.20758 0.96738 0.92772 1.20292 1.17992 0.86421 0.93248 0.89300 1.19927 1.02502 0.91703 1.31852 0.89939 1.27029 0.93590 1.06330 0.91780 1.69826 1.09938 1.41228 1.19047 0.85004 0.79797 0.74230 0.79607 1.17844 1.18276 1.18247 1.22275 0.92118 0.94526 1.10676 1.73704 1.03794 1.15203 1.21679 0.87716 0.86049 0.86386 0.87099 0.85522 0.86396 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.46 11.54 127.77 1.47 3.94 15 2 N -0.14 -6.01 4.35 -206.54 -0.90 -6.91 15 3 N -0.36 -17.22 12.10 -52.05 -0.63 -17.85 15 4 C 0.06 2.99 7.41 40.69 0.30 3.29 15 5 C -0.28 -14.06 10.08 22.71 0.23 -13.84 15 6 C -0.02 -0.93 9.91 22.13 0.22 -0.71 15 7 C -0.28 -15.07 8.70 22.84 0.20 -14.87 15 8 C 0.14 7.69 5.72 -19.98 -0.11 7.57 15 9 C -0.43 -23.03 9.08 23.23 0.21 -22.82 15 10 H 0.08 4.34 7.91 -2.91 -0.02 4.31 15 11 C 0.03 1.60 5.15 85.32 0.44 2.04 15 12 N -0.78 -37.97 10.96 21.87 0.24 -37.73 15 13 Si 1.00 35.27 29.60 68.60 2.03 37.30 15 14 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 15 H -0.26 -8.49 7.11 99.48 0.71 -7.79 15 16 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 17 C -0.04 -2.43 7.38 42.47 0.31 -2.12 15 18 N -0.29 -14.72 12.05 -48.27 -0.58 -15.31 15 19 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 20 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15 21 H 0.12 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.11 4.96 8.06 -2.91 -0.02 4.93 15 23 H 0.13 5.12 8.06 -2.91 -0.02 5.10 15 24 H 0.12 6.27 6.14 -2.91 -0.02 6.25 15 25 H 0.30 12.85 8.29 -92.71 -0.77 12.08 15 Total: -1.00 -67.04 228.22 4.64 -62.40 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.21 Total: 15.59 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.27 Total: -37.51 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.87 Total: -77.79 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -67.04 4.64 -62.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261185628.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.667 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds