Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47034 * 240.00079 * 3 2 1 5 5 H 1.48496 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46835 * 120.00439 * 3 2 1 7 7 C 1.37872 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00915 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47222 * 179.97438 * 9 7 2 11 11 C 1.36026 * 120.42912 * 264.97750 * 10 9 7 12 12 C 1.40565 * 119.69414 * 179.75982 * 11 10 9 13 13 C 1.34933 * 120.46889 * 0.54322 * 12 11 10 14 14 N 1.36427 * 120.52837 * 359.45107 * 13 12 11 15 15 N 1.40007 * 133.62645 * 180.28497 * 14 13 12 16 16 N 1.28733 * 108.71224 * 180.02562 * 15 14 13 17 17 C 1.32503 * 110.65612 * 359.97438 * 16 15 14 18 18 C 1.37413 * 120.25283 * 0.27808 * 14 13 12 19 19 H 0.96993 * 119.99825 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46840 * 59.99507 * 9 7 2 21 21 H 1.09001 * 109.46822 * 299.99814 * 9 7 2 22 22 H 1.07999 * 120.15424 * 0.02562 * 11 10 9 23 23 H 1.07996 * 119.76715 * 180.29195 * 12 11 10 24 24 H 1.08002 * 119.73961 * 179.73471 * 13 12 11 25 25 H 1.08004 * 125.82687 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.6002 -4.2338 -1.1716 12 6 3.5186 -5.2978 -1.1551 13 6 4.0269 -5.7448 0.0122 14 7 3.6660 -5.1641 1.1928 15 7 4.0155 -5.3939 2.5289 16 7 3.3825 -4.5544 3.2717 17 6 2.6197 -3.7605 2.5343 18 6 2.7742 -4.1188 1.2060 19 1 -0.4849 0.8400 0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6242 -2.5575 0.8880 22 1 2.1932 -3.8831 -2.1085 23 1 3.8166 -5.7634 -2.0828 24 1 4.7285 -6.5659 0.0116 25 1 1.9853 -2.9695 2.9062 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218046.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 111.316192 kcal Electronic energy + Delta-G solvation = -12316.571854 eV Core-core repulsion = 10104.217443 eV Total energy + Delta-G solvation = -2212.354412 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.02145 -37.68839 -34.33265 -32.39288 -31.17623 -29.06836 -27.34575 -24.04075 -23.02612 -22.47890 -20.49074 -17.22263 -16.71380 -16.49981 -15.51135 -15.39024 -14.70349 -13.96443 -13.35172 -12.55415 -12.23544 -12.04241 -11.91556 -11.49577 -11.11169 -10.80277 -10.70716 -10.58440 -10.29555 -9.80917 -9.43924 -9.18354 -8.55103 -7.33121 -6.17620 -4.23488 1.17861 1.24348 2.59910 3.03065 3.25919 3.30753 3.33745 3.78536 4.35037 4.59716 4.96584 5.10551 5.18485 5.25116 5.40638 5.68185 5.84595 6.05859 6.39224 6.61411 6.74602 6.86786 7.14127 7.31775 7.46787 7.75994 8.09361 8.67738 8.79963 9.41765 10.91676 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.010219 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.072368 B = 2739.437895 C = 3054.208087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.054 3.946 10 C 0.004 3.996 11 C -0.127 4.127 12 C -0.116 4.116 13 C 0.049 3.951 14 N -0.275 5.275 15 N -0.145 5.145 16 N -0.234 5.234 17 C -0.054 4.054 18 C 0.075 3.925 19 H 0.265 0.735 20 H 0.040 0.960 21 H 0.039 0.961 22 H 0.142 0.858 23 H 0.151 0.849 24 H 0.164 0.836 25 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 -7.657 -3.414 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.016 3.984 10 C 0.001 3.999 11 C -0.151 4.151 12 C -0.138 4.138 13 C -0.077 4.077 14 N -0.047 5.047 15 N -0.118 5.118 16 N -0.090 5.090 17 C -0.222 4.222 18 C -0.050 4.050 19 H 0.075 0.925 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.160 0.840 23 H 0.168 0.832 24 H 0.181 0.819 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.934 -8.487 -2.153 10.051 hybrid contribution -0.029 1.486 -0.863 1.719 sum 4.905 -7.001 -3.016 9.065 Atomic orbital electron populations 1.69923 1.06016 1.27315 1.49546 1.24956 0.94887 0.99261 0.94733 0.86567 0.79574 0.82571 0.78877 1.20113 1.21067 1.19998 1.20891 0.92959 0.89401 1.52408 0.92487 1.18383 0.91993 0.88489 0.99493 1.20345 0.95846 0.95386 0.88351 1.21136 0.98684 0.96217 0.99066 1.21010 0.97996 0.98016 0.96825 1.21280 1.03505 1.01123 0.81766 1.48026 1.26895 1.21339 1.08390 1.82095 1.26097 1.23719 0.79889 1.73582 1.05280 1.02519 1.27641 1.23268 1.06529 1.04845 0.87533 1.20329 0.95345 0.91830 0.97507 0.92496 0.94137 0.94261 0.83996 0.83188 0.81888 0.78918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 13.29 55.43 0.74 -23.98 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 7 C -0.52 -13.50 9.09 -34.44 -0.31 -13.81 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.05 1.25 5.02 -29.03 -0.15 1.11 15 10 C 0.00 0.08 5.09 -104.46 -0.53 -0.45 15 11 C -0.13 -2.07 9.71 -39.50 -0.38 -2.45 15 12 C -0.12 -1.50 9.98 -39.88 -0.40 -1.90 15 13 C 0.05 0.71 11.21 -16.68 -0.19 0.52 15 14 N -0.28 -5.19 3.96 -10.79 -0.04 -5.23 15 15 N -0.15 -2.98 13.86 60.35 0.84 -2.14 15 16 N -0.23 -4.93 12.24 30.62 0.37 -4.55 15 17 C -0.05 -1.11 11.76 -17.19 -0.20 -1.31 15 18 C 0.07 1.52 6.71 -84.33 -0.57 0.96 15 19 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.04 0.97 8.05 -51.93 -0.42 0.55 15 21 H 0.04 0.96 8.04 -51.93 -0.42 0.55 15 22 H 0.14 2.08 8.06 -52.49 -0.42 1.65 15 23 H 0.15 1.29 8.06 -52.49 -0.42 0.87 15 24 H 0.16 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.19 3.73 8.06 -52.48 -0.42 3.31 15 LS Contribution 232.60 15.07 3.51 3.51 Total: -1.00 -29.85 232.60 -4.50 -34.35 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -2.07 Total: -1.84 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.82 Total: -15.73 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 1.90 Total: -35.90 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.85 -4.50 -34.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218046.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.671 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds