Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47034 * 240.00079 * 3 2 1 5 5 H 1.48496 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46835 * 120.00439 * 3 2 1 7 7 C 1.37872 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00915 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47222 * 179.97438 * 9 7 2 11 11 C 1.36026 * 120.42912 * 264.97750 * 10 9 7 12 12 C 1.40565 * 119.69414 * 179.75982 * 11 10 9 13 13 C 1.34933 * 120.46889 * 0.54322 * 12 11 10 14 14 N 1.36427 * 120.52837 * 359.45107 * 13 12 11 15 15 N 1.40007 * 133.62645 * 180.28497 * 14 13 12 16 16 N 1.28733 * 108.71224 * 180.02562 * 15 14 13 17 17 C 1.32503 * 110.65612 * 359.97438 * 16 15 14 18 18 C 1.37413 * 120.25283 * 0.27808 * 14 13 12 19 19 H 0.96993 * 119.99825 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.46840 * 59.99507 * 9 7 2 21 21 H 1.09001 * 109.46822 * 299.99814 * 9 7 2 22 22 H 1.07999 * 120.15424 * 0.02562 * 11 10 9 23 23 H 1.07996 * 119.76715 * 180.29195 * 12 11 10 24 24 H 1.08002 * 119.73961 * 179.73471 * 13 12 11 25 25 H 1.08004 * 125.82687 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.6002 -4.2338 -1.1716 12 6 3.5186 -5.2978 -1.1551 13 6 4.0269 -5.7448 0.0122 14 7 3.6660 -5.1641 1.1928 15 7 4.0155 -5.3939 2.5289 16 7 3.3825 -4.5544 3.2717 17 6 2.6197 -3.7605 2.5343 18 6 2.7742 -4.1188 1.2060 19 1 -0.4849 0.8400 0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6242 -2.5575 0.8880 22 1 2.1932 -3.8831 -2.1085 23 1 3.8166 -5.7634 -2.0828 24 1 4.7285 -6.5659 0.0116 25 1 1.9853 -2.9695 2.9062 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218046.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 92.416225 kcal Electronic energy + Delta-G solvation = -12317.391418 eV Core-core repulsion = 10104.217443 eV Total energy + Delta-G solvation = -2213.173976 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.47119 -39.08290 -36.00953 -34.18577 -32.56552 -30.67557 -28.98889 -25.73890 -24.42885 -24.07285 -22.01275 -18.68594 -18.48753 -18.05049 -17.00596 -16.75660 -16.43970 -15.34956 -14.87690 -14.43327 -13.72610 -13.51752 -13.45681 -13.18400 -12.78932 -12.48563 -12.35532 -12.21983 -11.95455 -11.61482 -11.12646 -10.62016 -10.57446 -8.79390 -8.18780 -6.31969 -0.16419 -0.13736 1.26040 1.42462 1.44461 1.51726 1.53572 2.34842 2.50130 3.12731 3.28812 3.59945 3.84022 3.95323 4.12792 4.18384 4.66362 4.78659 4.98519 5.17170 5.22203 5.33550 5.48716 5.70600 5.72909 5.88555 6.13267 6.78231 7.16506 7.36644 8.88921 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.010219 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.072368 B = 2739.437895 C = 3054.208087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.065 3.935 10 C -0.039 4.039 11 C -0.100 4.100 12 C -0.096 4.096 13 C 0.051 3.949 14 N -0.277 5.277 15 N -0.166 5.166 16 N -0.249 5.249 17 C -0.080 4.080 18 C 0.065 3.935 19 H 0.266 0.734 20 H 0.030 0.970 21 H 0.012 0.988 22 H 0.162 0.838 23 H 0.212 0.788 24 H 0.208 0.792 25 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -8.803 -5.568 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.043 4.043 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.074 4.074 14 N -0.047 5.047 15 N -0.138 5.138 16 N -0.105 5.105 17 C -0.249 4.249 18 C -0.060 4.060 19 H 0.075 0.925 20 H 0.048 0.952 21 H 0.030 0.970 22 H 0.179 0.821 23 H 0.228 0.772 24 H 0.225 0.775 25 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.597 -9.649 -4.298 12.454 hybrid contribution -0.510 1.719 -0.358 1.829 sum 6.087 -7.930 -4.656 11.028 Atomic orbital electron populations 1.70026 1.07350 1.28065 1.50811 1.25722 0.95608 1.02483 0.94559 0.85645 0.78447 0.78910 0.78959 1.19043 1.20625 1.20144 1.21200 0.92834 0.90957 1.51543 0.93096 1.18046 0.92272 0.89402 0.97560 1.20001 0.97838 0.96602 0.89862 1.21589 0.97159 0.95365 0.98248 1.21636 0.95509 0.96025 0.98618 1.22386 1.03225 1.01333 0.80504 1.48250 1.26377 1.21006 1.09087 1.81956 1.26954 1.24195 0.80740 1.73510 1.05662 1.02895 1.28410 1.23312 1.07547 1.05637 0.88403 1.20293 0.95923 0.92526 0.97290 0.92455 0.95226 0.96983 0.82082 0.77164 0.77485 0.79427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.32 13.29 21.45 0.28 -52.03 15 2 C 0.02 0.84 5.46 84.65 0.46 1.30 15 3 Si 0.96 42.45 29.54 68.60 2.03 44.47 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 7 C -0.53 -27.87 9.09 25.60 0.23 -27.64 15 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 15 9 C 0.06 3.10 5.02 29.10 0.15 3.25 15 10 C -0.04 -1.55 5.09 -19.76 -0.10 -1.65 15 11 C -0.10 -2.90 9.71 22.32 0.22 -2.68 15 12 C -0.10 -1.94 9.98 22.08 0.22 -1.72 15 13 C 0.05 1.23 11.21 83.22 0.93 2.16 15 14 N -0.28 -9.93 3.96 -188.05 -0.74 -10.67 15 15 N -0.17 -6.73 13.86 37.02 0.51 -6.22 15 16 N -0.25 -10.76 12.24 -57.05 -0.70 -11.46 15 17 C -0.08 -3.44 11.76 84.64 1.00 -2.44 15 18 C 0.06 2.64 6.71 38.94 0.26 2.90 15 19 H 0.27 14.32 8.31 -92.71 -0.77 13.55 15 20 H 0.03 1.44 8.05 -2.39 -0.02 1.43 15 21 H 0.01 0.62 8.04 -2.39 -0.02 0.60 15 22 H 0.16 4.06 8.06 -2.91 -0.02 4.04 15 23 H 0.21 1.83 8.06 -2.91 -0.02 1.81 15 24 H 0.21 3.14 8.06 -2.91 -0.02 3.12 15 25 H 0.19 7.89 8.06 -2.91 -0.02 7.87 15 Total: -1.00 -66.89 232.60 5.95 -60.94 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.20 Total: 1.48 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.37 Total: -26.52 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -0.64 Total: -80.38 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.89 5.95 -60.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218046.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.360 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds