Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.32503 * 125.82929 * 269.68628 * 10 9 7 12 12 N 1.28736 * 110.65560 * 179.87867 * 11 10 9 13 13 N 1.40001 * 108.71099 * 0.38707 * 12 11 10 14 14 C 1.36423 * 133.62095 * 179.74323 * 13 12 11 15 15 C 1.34935 * 120.52823 * 180.02562 * 14 13 12 16 16 C 1.40563 * 120.47101 * 359.97438 * 15 14 13 17 17 C 1.36035 * 119.69122 * 0.02562 * 16 15 14 18 18 C 1.37416 * 106.12169 * 359.77119 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08001 * 119.73480 * 0.02706 * 14 13 12 23 23 H 1.07994 * 119.76611 * 180.02562 * 15 14 13 24 24 H 1.07995 * 120.15733 * 180.02562 * 16 15 14 25 25 H 1.07999 * 120.42502 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7299 -4.2332 -1.0872 12 7 3.5406 -5.1762 -0.7544 13 7 3.5970 -5.2478 0.6426 14 6 4.2747 -6.0455 1.5176 15 6 4.1293 -5.8809 2.8489 16 6 3.2772 -4.8842 3.3551 17 6 2.5946 -4.0809 2.4953 18 6 2.7567 -4.2657 1.1093 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 4.9329 -6.8148 1.1416 23 1 4.6721 -6.5190 3.5305 24 1 3.1649 -4.7567 4.4216 25 1 1.9364 -3.3116 2.8713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218785.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = 114.554931 kcal Electronic energy + Delta-G solvation = -12242.280352 eV Core-core repulsion = 10030.066382 eV Total energy + Delta-G solvation = -2212.213969 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.96525 -37.61931 -33.81148 -32.52708 -31.12059 -29.86507 -26.77216 -23.80869 -23.33145 -22.86936 -20.25674 -17.18092 -16.58988 -16.36336 -15.66301 -15.39759 -14.62446 -14.34517 -13.06476 -12.46120 -12.42155 -12.00005 -11.67560 -11.46991 -11.09797 -10.84138 -10.68381 -10.37936 -10.24674 -9.77584 -9.38761 -9.27132 -8.42970 -7.23758 -6.04108 -4.07839 0.99401 1.18681 2.61803 3.17217 3.30334 3.38241 3.43579 3.68132 4.45297 4.51903 4.86895 4.93401 5.12314 5.27297 5.37389 5.65760 5.79902 5.92004 6.16155 6.35535 6.65691 7.01712 7.15706 7.47365 7.59226 7.90768 8.28778 8.90775 8.94999 9.55565 11.05277 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.044443 B = 0.009415 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.863385 B = 2973.239970 C = 3215.762582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.094 3.906 10 C 0.027 3.973 11 N -0.227 5.227 12 N -0.136 5.136 13 N -0.287 5.287 14 C 0.082 3.918 15 C -0.141 4.141 16 C -0.121 4.121 17 C -0.056 4.056 18 C 0.044 3.956 19 H 0.262 0.738 20 H 0.038 0.962 21 H 0.041 0.959 22 H 0.165 0.835 23 H 0.150 0.850 24 H 0.139 0.861 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -9.594 8.696 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.055 3.945 10 C -0.120 4.120 11 N -0.084 5.084 12 N -0.108 5.108 13 N -0.061 5.061 14 C -0.044 4.044 15 C -0.164 4.164 16 C -0.145 4.145 17 C -0.077 4.077 18 C -0.080 4.080 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.182 0.818 23 H 0.168 0.832 24 H 0.157 0.843 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.409 -10.099 7.043 13.880 hybrid contribution 0.304 1.210 0.967 1.579 sum 6.713 -8.889 8.010 13.720 Atomic orbital electron populations 1.69956 1.05956 1.26804 1.50507 1.24957 0.94872 0.99145 0.95112 0.86470 0.80095 0.83433 0.77663 1.19799 1.20835 1.20900 1.21043 0.93007 0.89773 1.51019 0.92675 1.17769 0.90881 0.86781 0.99071 1.22858 1.03624 1.00898 0.84614 1.73639 1.04989 1.02840 1.26952 1.82120 1.23979 1.21215 0.83459 1.48070 1.27528 1.21683 1.08862 1.21400 0.97982 0.96333 0.88640 1.20892 1.01419 1.00685 0.93414 1.21098 0.97182 0.95642 1.00541 1.20771 0.99053 0.99177 0.88747 1.20110 0.97726 0.94118 0.96027 0.92803 0.94357 0.94046 0.81807 0.83244 0.84288 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 15 8 H 0.05 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.09 2.47 5.52 -29.03 -0.16 2.31 15 10 C 0.03 0.65 6.41 -82.23 -0.53 0.12 15 11 N -0.23 -5.57 12.24 33.65 0.41 -5.16 15 12 N -0.14 -3.00 13.86 60.35 0.84 -2.16 15 13 N -0.29 -5.43 3.95 -10.79 -0.04 -5.47 15 14 C 0.08 1.09 11.21 -16.68 -0.19 0.91 15 15 C -0.14 -1.50 9.98 -39.88 -0.40 -1.90 15 16 C -0.12 -1.44 10.07 -39.50 -0.40 -1.83 15 17 C -0.06 -0.90 10.10 -39.42 -0.40 -1.30 15 18 C 0.04 0.89 6.81 -84.33 -0.57 0.31 15 19 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 20 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.04 1.17 8.14 -51.93 -0.42 0.74 15 22 H 0.16 1.62 8.06 -52.49 -0.42 1.19 15 23 H 0.15 0.96 8.06 -52.49 -0.42 0.54 15 24 H 0.14 1.17 8.06 -52.49 -0.42 0.74 15 25 H 0.16 2.37 8.06 -52.49 -0.42 1.94 15 LS Contribution 233.41 15.07 3.52 3.52 Total: -1.00 -32.85 233.41 -4.69 -37.55 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: -2.08 Total: -5.00 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.05 Total: -14.52 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 1.94 Total: -38.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.85 -4.69 -37.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218785.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.102 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds