Wall clock time and date at job start Mon Mar 30 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.32503 * 125.82929 * 269.68628 * 10 9 7 12 12 N 1.28736 * 110.65560 * 179.87867 * 11 10 9 13 13 N 1.40001 * 108.71099 * 0.38707 * 12 11 10 14 14 C 1.36423 * 133.62095 * 179.74323 * 13 12 11 15 15 C 1.34935 * 120.52823 * 180.02562 * 14 13 12 16 16 C 1.40563 * 120.47101 * 359.97438 * 15 14 13 17 17 C 1.36035 * 119.69122 * 0.02562 * 16 15 14 18 18 C 1.37416 * 106.12169 * 359.77119 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08001 * 119.73480 * 0.02706 * 14 13 12 23 23 H 1.07994 * 119.76611 * 180.02562 * 15 14 13 24 24 H 1.07995 * 120.15733 * 180.02562 * 16 15 14 25 25 H 1.07999 * 120.42502 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7299 -4.2332 -1.0872 12 7 3.5406 -5.1762 -0.7544 13 7 3.5970 -5.2478 0.6426 14 6 4.2747 -6.0455 1.5176 15 6 4.1293 -5.8809 2.8489 16 6 3.2772 -4.8842 3.3551 17 6 2.5946 -4.0809 2.4953 18 6 2.7567 -4.2657 1.1093 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 4.9329 -6.8148 1.1416 23 1 4.6721 -6.5190 3.5305 24 1 3.1649 -4.7567 4.4216 25 1 1.9364 -3.3116 2.8713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218785.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:30 Heat of formation + Delta-G solvation = 91.549056 kcal Electronic energy + Delta-G solvation = -12243.277961 eV Core-core repulsion = 10030.066382 eV Total energy + Delta-G solvation = -2213.211579 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.42706 -38.91585 -35.69209 -34.18194 -32.54372 -31.46372 -28.56054 -25.31644 -24.99492 -24.28386 -21.83545 -18.63120 -18.50081 -17.77754 -16.95603 -16.76452 -16.47628 -15.61610 -14.73077 -14.40174 -13.78452 -13.44617 -13.36060 -13.11828 -12.69935 -12.61055 -12.34453 -12.00557 -11.89366 -11.72693 -11.30598 -10.60876 -10.58039 -8.74521 -8.17254 -6.32719 -0.15969 -0.12554 1.32824 1.39198 1.41289 1.53121 1.62581 2.38270 2.46579 3.10382 3.30318 3.66027 3.81343 3.94158 4.13870 4.22882 4.68715 4.73828 5.06960 5.17860 5.24622 5.37863 5.47879 5.57039 5.71243 5.91542 6.15500 6.74732 7.31561 7.35358 8.89933 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.044443 B = 0.009415 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.863385 B = 2973.239970 C = 3215.762582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.042 0.958 9 C 0.110 3.890 10 C -0.027 4.027 11 N -0.266 5.266 12 N -0.176 5.176 13 N -0.282 5.282 14 C 0.060 3.940 15 C -0.109 4.109 16 C -0.072 4.072 17 C -0.101 4.101 18 C 0.048 3.952 19 H 0.268 0.732 20 H 0.031 0.969 21 H 0.003 0.997 22 H 0.201 0.799 23 H 0.214 0.786 24 H 0.192 0.808 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 -10.622 12.189 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.071 3.929 10 C -0.176 4.176 11 N -0.121 5.121 12 N -0.147 5.147 13 N -0.055 5.055 14 C -0.065 4.065 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.122 4.122 18 C -0.077 4.077 19 H 0.077 0.923 20 H 0.049 0.951 21 H 0.021 0.979 22 H 0.218 0.782 23 H 0.231 0.769 24 H 0.209 0.791 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.514 -11.157 10.514 17.536 hybrid contribution -0.246 1.323 0.194 1.360 sum 8.268 -9.834 10.707 16.725 Atomic orbital electron populations 1.70062 1.07418 1.28073 1.50871 1.25816 0.95771 1.02699 0.94322 0.85394 0.78491 0.78797 0.78306 1.19773 1.20350 1.19063 1.21228 0.92489 0.91262 1.51592 0.93984 1.17350 0.90971 0.87881 0.96728 1.22450 1.06124 1.02520 0.86554 1.73480 1.06189 1.04047 1.28382 1.81917 1.25480 1.21956 0.85333 1.48252 1.27128 1.21642 1.08439 1.22523 0.98127 0.96526 0.89341 1.21747 0.99134 0.99401 0.92813 1.21842 0.92989 0.92345 1.02418 1.20994 1.02042 1.01890 0.87281 1.20314 0.96948 0.93508 0.96889 0.92287 0.95069 0.97875 0.78214 0.76903 0.79129 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.29 21.45 0.28 -55.30 15 2 C 0.01 0.74 5.46 84.66 0.46 1.20 15 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 15 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 7 C -0.53 -31.41 9.09 25.60 0.23 -31.18 15 8 H 0.04 2.55 7.74 -2.91 -0.02 2.52 15 9 C 0.11 6.23 5.52 29.10 0.16 6.40 15 10 C -0.03 -1.36 6.41 42.50 0.27 -1.09 15 11 N -0.27 -14.02 12.24 -47.45 -0.58 -14.60 15 12 N -0.18 -8.09 13.86 37.02 0.51 -7.57 15 13 N -0.28 -10.50 3.95 -188.06 -0.74 -11.24 15 14 C 0.06 1.34 11.21 83.22 0.93 2.28 15 15 C -0.11 -1.54 9.98 22.08 0.22 -1.32 15 16 C -0.07 -1.28 10.07 22.32 0.22 -1.06 15 17 C -0.10 -3.03 10.10 22.38 0.23 -2.80 15 18 C 0.05 1.97 6.81 38.93 0.27 2.24 15 19 H 0.27 14.96 8.31 -92.70 -0.77 14.18 15 20 H 0.03 1.74 8.14 -2.38 -0.02 1.72 15 21 H 0.00 0.18 8.14 -2.39 -0.02 0.16 15 22 H 0.20 2.95 8.06 -2.91 -0.02 2.93 15 23 H 0.21 0.56 8.06 -2.91 -0.02 0.53 15 24 H 0.19 1.57 8.06 -2.91 -0.02 1.55 15 25 H 0.15 4.60 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -79.28 233.41 5.69 -73.59 By element: Atomic # 1 Polarization: -7.72 SS G_CDS: 1.20 Total: -6.53 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 3.00 Total: -25.34 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -0.53 Total: -88.71 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.28 5.69 -73.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218785.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.140 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds