Wall clock time and date at job start Mon Mar 30 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39898 * 120.32572 * 2 1 4 4 N 1.31730 * 120.12822 * 180.02562 * 3 2 1 5 5 C 1.32905 * 120.90653 * 359.72182 * 4 3 2 6 6 C 1.41839 * 132.56701 * 179.58259 * 5 4 3 7 7 C 1.40717 * 126.67824 * 0.73763 * 6 5 4 8 8 H 1.08002 * 119.99521 * 349.58200 * 7 6 5 9 9 C 1.39695 * 119.99987 * 169.85420 * 7 6 5 10 10 N 1.31122 * 119.99767 * 348.88802 * 9 7 6 11 11 Si 1.86793 * 120.00082 * 168.89054 * 9 7 6 12 12 H 1.48499 * 109.47199 * 93.57834 * 11 9 7 13 13 H 1.48498 * 109.47424 * 213.58226 * 11 9 7 14 14 H 1.48506 * 109.46927 * 333.57771 * 11 9 7 15 15 C 1.41325 * 106.64670 * 180.47381 * 6 5 4 16 16 N 1.30588 * 108.74050 * 0.26827 * 15 6 5 17 17 N 1.36927 * 120.86946 * 0.58757 * 5 4 3 18 18 C 1.35895 * 120.32193 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.47655 * 269.97956 * 1 2 3 20 20 H 1.09006 * 109.46968 * 29.98260 * 1 2 3 21 21 H 1.09007 * 109.46991 * 149.98019 * 1 2 3 22 22 H 1.08000 * 119.93564 * 0.02562 * 3 2 1 23 23 H 0.97002 * 119.99374 * 179.97438 * 10 9 7 24 24 H 1.08004 * 125.63286 * 180.22673 * 15 6 5 25 25 H 1.07996 * 120.44751 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2076 0.0000 4 7 3.5307 1.2030 -0.0005 5 6 4.2094 0.0603 0.0045 6 6 5.5975 -0.2312 -0.0023 7 6 6.6520 0.7005 -0.0026 8 1 6.4468 1.7482 -0.1665 9 6 7.9648 0.2697 0.2034 10 7 8.1965 -0.9549 0.6109 11 14 9.3900 1.4380 -0.1015 12 1 9.7564 2.1140 1.1689 13 1 10.5570 0.6733 -0.6098 14 1 8.9895 2.4557 -1.1062 15 6 5.7154 -1.6395 -0.0025 16 7 4.5181 -2.1608 -0.0022 17 7 3.5577 -1.1439 -0.0017 18 6 2.1931 -1.1730 -0.0005 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3633 0.8902 -0.5136 21 1 -0.3633 -0.8899 -0.5142 22 1 1.6776 2.1453 0.0004 23 1 9.1081 -1.2541 0.7535 24 1 6.6427 -2.1933 -0.0035 25 1 1.6657 -2.1155 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222014.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:36 Heat of formation + Delta-G solvation = 100.793390 kcal Electronic energy + Delta-G solvation = -12330.114008 eV Core-core repulsion = 10117.303294 eV Total energy + Delta-G solvation = -2212.810715 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55338 -36.87976 -33.96353 -32.85364 -31.03823 -28.92070 -26.29356 -24.62708 -23.32521 -20.91474 -20.06542 -17.65985 -16.30117 -15.99318 -14.80920 -14.54693 -14.40789 -13.18261 -12.95928 -12.88854 -12.26825 -11.86611 -11.73869 -11.51564 -11.20470 -11.06494 -11.01625 -10.42415 -9.98400 -9.53923 -9.18388 -8.50807 -8.00493 -7.02283 -6.88551 -4.06873 1.82648 2.11327 3.00041 3.05084 3.12194 3.60608 3.88068 4.01595 4.49738 5.23846 5.31509 5.39887 5.53588 5.67814 5.81859 5.91216 6.20878 6.53132 6.73407 6.84023 6.86877 7.15429 7.44199 7.69610 7.98095 8.30608 8.48148 8.71911 9.05394 9.21027 10.08611 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.062427 B = 0.009549 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.417868 B = 2931.399539 C = 3347.709254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.199 4.199 3 C 0.038 3.962 4 N -0.397 5.397 5 C 0.071 3.929 6 C 0.027 3.973 7 C -0.389 4.389 8 H 0.087 0.913 9 C 0.062 3.938 10 N -0.809 5.809 11 Si 0.926 3.074 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.260 1.260 15 C 0.039 3.961 16 N -0.315 5.315 17 N -0.344 5.344 18 C 0.126 3.874 19 H 0.060 0.940 20 H 0.064 0.936 21 H 0.057 0.943 22 H 0.145 0.855 23 H 0.284 0.716 24 H 0.206 0.794 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 0.945 -0.930 5.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.207 4.207 3 C -0.146 4.146 4 N -0.105 5.105 5 C -0.152 4.152 6 C 0.016 3.984 7 C -0.421 4.421 8 H 0.105 0.895 9 C -0.154 4.154 10 N -0.436 5.436 11 Si 0.751 3.249 12 H -0.194 1.194 13 H -0.200 1.200 14 H -0.183 1.183 15 C -0.144 4.144 16 N -0.138 5.138 17 N -0.125 5.125 18 C -0.006 4.006 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.076 0.924 22 H 0.163 0.837 23 H 0.095 0.905 24 H 0.222 0.778 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.449 0.372 -0.874 5.532 hybrid contribution 0.533 0.377 -0.026 0.654 sum -4.916 0.749 -0.900 5.054 Atomic orbital electron populations 1.20374 0.90301 1.01983 1.01428 1.19870 0.96643 0.93108 1.11064 1.22190 0.89122 0.96419 1.06859 1.67292 1.08494 1.26879 1.07855 1.20004 0.93385 0.80831 1.21006 1.17688 0.87830 0.92859 0.99999 1.18939 0.89472 0.95453 1.38246 0.89475 1.25974 1.00686 0.96074 0.92628 1.69656 1.23240 1.17427 1.33319 0.85980 0.79023 0.80241 0.79684 1.19426 1.20002 1.18346 1.24660 0.94590 0.94393 1.00769 1.76759 0.97845 1.11863 1.27340 1.45865 1.03960 1.07062 1.55616 1.21146 0.80835 0.98843 0.99745 0.92102 0.91723 0.92435 0.83735 0.90471 0.77820 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.03 36.01 0.36 -0.68 15 2 C -0.20 -3.64 5.86 -104.84 -0.61 -4.25 15 3 C 0.04 0.78 10.97 -16.97 -0.19 0.59 15 4 N -0.40 -9.97 10.45 -11.72 -0.12 -10.09 15 5 C 0.07 1.92 7.92 -155.53 -1.23 0.69 15 6 C 0.03 0.76 5.91 -106.41 -0.63 0.13 15 7 C -0.39 -10.50 9.36 -38.10 -0.36 -10.85 15 8 H 0.09 2.34 7.87 -52.49 -0.41 1.92 15 9 C 0.06 1.53 5.44 -17.31 -0.09 1.43 15 10 N -0.81 -19.94 10.65 55.54 0.59 -19.35 15 11 Si 0.93 18.48 29.57 -169.99 -5.03 13.45 15 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 13 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 14 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 15 C 0.04 1.02 10.81 -16.91 -0.18 0.84 15 16 N -0.31 -8.17 12.55 30.89 0.39 -7.78 15 17 N -0.34 -8.68 3.88 -11.66 -0.05 -8.73 15 18 C 0.13 2.58 10.96 -16.32 -0.18 2.40 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.72 8.10 -51.93 -0.42 0.30 15 21 H 0.06 0.64 8.09 -51.93 -0.42 0.22 15 22 H 0.15 2.40 8.06 -52.49 -0.42 1.98 15 23 H 0.28 6.31 8.30 -40.82 -0.34 5.97 15 24 H 0.21 5.25 6.12 -52.48 -0.32 4.92 15 25 H 0.15 2.48 8.06 -52.49 -0.42 2.05 15 LS Contribution 228.40 15.07 3.44 3.44 Total: -1.00 -29.85 228.40 -5.86 -35.71 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -1.98 Total: 3.05 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.11 Total: -9.70 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.81 Total: -45.95 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.85 -5.86 -35.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222014.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.502 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds