Wall clock time and date at job start Mon Mar 30 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39898 * 120.32572 * 2 1 4 4 N 1.31730 * 120.12822 * 180.02562 * 3 2 1 5 5 C 1.32905 * 120.90653 * 359.72182 * 4 3 2 6 6 C 1.41839 * 132.56701 * 179.58259 * 5 4 3 7 7 C 1.40717 * 126.67824 * 0.73763 * 6 5 4 8 8 H 1.08002 * 119.99521 * 349.58200 * 7 6 5 9 9 C 1.39695 * 119.99987 * 169.85420 * 7 6 5 10 10 N 1.31122 * 119.99767 * 348.88802 * 9 7 6 11 11 Si 1.86793 * 120.00082 * 168.89054 * 9 7 6 12 12 H 1.48499 * 109.47199 * 93.57834 * 11 9 7 13 13 H 1.48498 * 109.47424 * 213.58226 * 11 9 7 14 14 H 1.48506 * 109.46927 * 333.57771 * 11 9 7 15 15 C 1.41325 * 106.64670 * 180.47381 * 6 5 4 16 16 N 1.30588 * 108.74050 * 0.26827 * 15 6 5 17 17 N 1.36927 * 120.86946 * 0.58757 * 5 4 3 18 18 C 1.35895 * 120.32193 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.47655 * 269.97956 * 1 2 3 20 20 H 1.09006 * 109.46968 * 29.98260 * 1 2 3 21 21 H 1.09007 * 109.46991 * 149.98019 * 1 2 3 22 22 H 1.08000 * 119.93564 * 0.02562 * 3 2 1 23 23 H 0.97002 * 119.99374 * 179.97438 * 10 9 7 24 24 H 1.08004 * 125.63286 * 180.22673 * 15 6 5 25 25 H 1.07996 * 120.44751 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2076 0.0000 4 7 3.5307 1.2030 -0.0005 5 6 4.2094 0.0603 0.0045 6 6 5.5975 -0.2312 -0.0023 7 6 6.6520 0.7005 -0.0026 8 1 6.4468 1.7482 -0.1665 9 6 7.9648 0.2697 0.2034 10 7 8.1965 -0.9549 0.6109 11 14 9.3900 1.4380 -0.1015 12 1 9.7564 2.1140 1.1689 13 1 10.5570 0.6733 -0.6098 14 1 8.9895 2.4557 -1.1062 15 6 5.7154 -1.6395 -0.0025 16 7 4.5181 -2.1608 -0.0022 17 7 3.5577 -1.1439 -0.0017 18 6 2.1931 -1.1730 -0.0005 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3633 0.8902 -0.5136 21 1 -0.3633 -0.8899 -0.5142 22 1 1.6776 2.1453 0.0004 23 1 9.1081 -1.2541 0.7535 24 1 6.6427 -2.1933 -0.0035 25 1 1.6657 -2.1155 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222014.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:35 Heat of formation + Delta-G solvation = 81.770302 kcal Electronic energy + Delta-G solvation = -12330.938911 eV Core-core repulsion = 10117.303294 eV Total energy + Delta-G solvation = -2213.635618 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.43502 -38.66784 -35.78795 -34.54382 -32.73674 -30.79468 -27.85631 -26.38256 -25.07596 -22.66712 -21.96873 -19.51236 -18.13518 -17.74687 -16.54485 -16.39206 -16.08933 -14.86567 -14.57115 -14.10639 -13.83701 -13.54191 -13.27207 -12.97376 -12.87235 -12.85233 -12.78052 -12.03275 -11.72628 -11.42924 -10.95050 -10.32464 -9.81005 -8.88349 -8.65912 -6.01105 0.10619 0.33600 1.40093 1.42521 1.56860 1.81633 2.11891 2.25125 2.71126 3.38683 3.58536 3.74846 3.99934 4.25644 4.46220 4.81750 4.92458 4.95839 4.99166 5.26555 5.31619 5.38057 5.69423 5.76624 6.16531 6.34966 6.60454 6.85775 7.12526 7.35623 8.35925 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.062427 B = 0.009549 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.417868 B = 2931.399539 C = 3347.709254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.183 4.183 3 C 0.079 3.921 4 N -0.451 5.451 5 C 0.059 3.941 6 C -0.022 4.022 7 C -0.437 4.437 8 H 0.071 0.929 9 C 0.026 3.974 10 N -0.840 5.840 11 Si 0.998 3.002 12 H -0.263 1.263 13 H -0.260 1.260 14 H -0.264 1.264 15 C 0.022 3.978 16 N -0.335 5.335 17 N -0.341 5.341 18 C 0.101 3.899 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.079 0.921 22 H 0.193 0.807 23 H 0.293 0.707 24 H 0.202 0.798 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 1.868 -1.045 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.191 4.191 3 C -0.107 4.107 4 N -0.160 5.160 5 C -0.164 4.164 6 C -0.033 4.033 7 C -0.469 4.469 8 H 0.089 0.911 9 C -0.186 4.186 10 N -0.468 5.468 11 Si 0.818 3.182 12 H -0.188 1.188 13 H -0.184 1.184 14 H -0.188 1.188 15 C -0.158 4.158 16 N -0.161 5.161 17 N -0.122 5.122 18 C -0.030 4.030 19 H 0.101 0.899 20 H 0.108 0.892 21 H 0.097 0.903 22 H 0.210 0.790 23 H 0.103 0.897 24 H 0.218 0.782 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.284 1.255 -0.986 8.436 hybrid contribution 0.805 0.189 0.012 0.827 sum -7.479 1.443 -0.973 7.679 Atomic orbital electron populations 1.20546 0.85181 1.04435 1.03517 1.20638 0.99907 0.91266 1.07257 1.23412 0.88125 0.99499 0.99614 1.67434 1.10636 1.26240 1.11693 1.20317 0.93846 0.82079 1.20191 1.18060 0.88961 0.93614 1.02632 1.18933 0.91009 0.94656 1.42349 0.91088 1.26751 1.02306 0.97799 0.91755 1.69677 1.24167 1.18756 1.34224 0.84946 0.75843 0.77956 0.79433 1.18808 1.18438 1.18778 1.24531 0.94887 0.94264 1.02137 1.76681 0.97846 1.11871 1.29680 1.46282 1.05604 1.06514 1.53752 1.22160 0.79199 1.01797 0.99827 0.89927 0.89196 0.90252 0.78981 0.89664 0.78188 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.03 71.24 0.71 -0.74 15 2 C -0.18 -5.81 5.86 -20.01 -0.12 -5.93 15 3 C 0.08 2.89 10.97 85.11 0.93 3.82 15 4 N -0.45 -22.29 10.45 -190.99 -2.00 -24.28 15 5 C 0.06 3.26 7.92 134.28 1.06 4.33 15 6 C -0.02 -1.28 5.91 -21.02 -0.12 -1.41 15 7 C -0.44 -25.16 9.36 23.23 0.22 -24.94 15 8 H 0.07 4.09 7.87 -2.91 -0.02 4.07 15 9 C 0.03 1.34 5.44 85.15 0.46 1.80 15 10 N -0.84 -43.59 10.65 21.80 0.23 -43.35 15 11 Si 1.00 39.30 29.57 68.60 2.03 41.33 15 12 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 14 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 15 C 0.02 1.22 10.81 85.64 0.93 2.14 15 16 N -0.34 -17.95 12.55 -56.18 -0.71 -18.65 15 17 N -0.34 -17.21 3.88 -190.79 -0.74 -17.95 15 18 C 0.10 3.84 10.96 83.42 0.91 4.75 15 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.09 1.30 8.10 -2.38 -0.02 1.28 15 21 H 0.08 1.22 8.09 -2.38 -0.02 1.20 15 22 H 0.19 5.16 8.06 -2.91 -0.02 5.14 15 23 H 0.29 13.52 8.30 -92.71 -0.77 12.75 15 24 H 0.20 11.10 6.12 -2.91 -0.02 11.08 15 25 H 0.18 5.47 8.06 -2.91 -0.02 5.45 15 Total: -1.00 -69.60 228.40 5.02 -64.59 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.21 Total: 14.50 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.99 Total: -16.17 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.21 Total: -104.24 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.60 5.02 -64.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222014.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.356 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds