Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48503 * 109.47161 * 270.00132 * 3 2 1 5 5 H 1.48501 * 109.47099 * 30.00212 * 3 2 1 6 6 H 1.48499 * 109.47040 * 149.99945 * 3 2 1 7 7 C 1.37871 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00368 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.50696 * 109.47639 * 179.97438 * 9 7 2 11 11 C 1.40545 * 120.12956 * 89.99612 * 10 9 7 12 12 C 1.34955 * 120.36757 * 179.72627 * 11 10 9 13 13 N 1.36384 * 120.50663 * 0.02562 * 12 11 10 14 14 C 1.36066 * 133.66020 * 180.02562 * 13 12 11 15 15 N 1.30797 * 107.50813 * 179.97438 * 14 13 12 16 16 N 1.28685 * 110.29020 * 0.02562 * 15 14 13 17 17 C 1.32303 * 109.48401 * 359.97438 * 16 15 14 18 18 C 1.36030 * 120.12191 * 269.72731 * 10 9 7 19 19 H 0.97007 * 120.00201 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.46963 * 59.99298 * 9 7 2 21 21 H 1.09005 * 109.46744 * 299.99983 * 9 7 2 22 22 H 1.07998 * 119.81559 * 359.74829 * 11 10 9 23 23 H 1.08002 * 119.74251 * 179.97438 * 12 11 10 24 24 H 1.08004 * 126.24460 * 359.96753 * 14 13 12 25 25 H 1.07992 * 120.38894 * 0.24301 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6149 -0.0001 11 6 4.2494 -3.2798 -1.2157 12 6 4.7045 -4.5503 -1.2214 13 7 4.9414 -5.2061 -0.0493 14 6 5.3895 -6.4544 0.2547 15 7 5.4271 -6.5523 1.5585 16 7 5.0335 -5.4533 2.1000 17 6 4.7198 -4.5829 1.1543 18 6 4.2462 -3.2569 1.1765 19 1 -0.4851 0.8401 -0.0004 20 1 3.8745 -0.6809 0.8904 21 1 3.8751 -0.6797 -0.8895 22 1 4.0655 -2.7711 -2.1504 23 1 4.8816 -5.0517 -2.1614 24 1 5.6640 -7.2240 -0.4517 25 1 4.0691 -2.7558 2.1165 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261240408.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = 82.493487 kcal Electronic energy + Delta-G solvation = -12150.075571 eV Core-core repulsion = 9936.471313 eV Total energy + Delta-G solvation = -2213.604258 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.42050 -39.39020 -36.00466 -34.52050 -32.48425 -31.38283 -29.39390 -25.60444 -24.75611 -23.45498 -22.38469 -19.13794 -18.98432 -17.94465 -17.40180 -16.77282 -16.20158 -15.72576 -15.30103 -14.52611 -13.91019 -13.73665 -13.39574 -13.11375 -12.75486 -12.45828 -12.40271 -11.88597 -11.74333 -11.55081 -11.47813 -10.77841 -10.38361 -8.96644 -8.29200 -6.36263 -0.21011 0.21543 1.40779 1.44421 1.47521 1.54578 1.79365 2.37244 2.43521 3.05588 3.18493 3.54962 3.81083 3.94657 4.00701 4.20049 4.66292 4.77891 4.98146 5.00508 5.03880 5.11483 5.41092 5.56572 5.65685 6.03611 6.22128 6.70515 7.27977 7.53466 8.87093 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.064775 B = 0.008020 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.161215 B = 3490.363593 C = 3567.188464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.523 4.523 8 H 0.028 0.972 9 C 0.019 3.981 10 C -0.004 4.004 11 C -0.135 4.135 12 C 0.074 3.926 13 N -0.400 5.400 14 C 0.128 3.872 15 N -0.302 5.302 16 N -0.355 5.355 17 C 0.196 3.804 18 C -0.134 4.134 19 H 0.268 0.732 20 H 0.036 0.964 21 H 0.055 0.945 22 H 0.181 0.819 23 H 0.228 0.772 24 H 0.279 0.721 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 -6.094 -7.301 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.183 1.183 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.561 4.561 8 H 0.047 0.953 9 C -0.018 4.018 10 C -0.011 4.011 11 C -0.155 4.155 12 C -0.047 4.047 13 N -0.080 5.080 14 C -0.155 4.155 15 N -0.139 5.139 16 N -0.201 5.201 17 C -0.054 4.054 18 C -0.156 4.156 19 H 0.077 0.923 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.199 0.801 23 H 0.244 0.756 24 H 0.294 0.706 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.007 -6.785 -5.826 14.971 hybrid contribution -0.652 1.263 -0.777 1.620 sum 11.355 -5.522 -6.603 14.248 Atomic orbital electron populations 1.70056 1.08515 1.28401 1.51911 1.25959 0.95508 1.03440 0.93767 0.85661 0.79503 0.77912 0.79639 1.18277 1.21644 1.16610 1.21058 0.90486 0.93087 1.51478 0.95315 1.18741 0.94337 0.89552 0.99159 1.20260 0.90636 0.97702 0.92507 1.21326 1.00229 0.94169 0.99810 1.22426 0.99889 0.93426 0.88923 1.44124 1.42905 1.12792 1.08205 1.27357 1.05278 0.87298 0.95613 1.73989 1.16427 1.16785 1.06741 1.74833 1.22296 0.98122 1.24860 1.22429 1.03213 0.96814 0.82933 1.20028 1.05079 0.89865 1.00602 0.92314 0.94533 0.92711 0.80133 0.75552 0.70608 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.19 13.96 21.45 0.30 -56.89 15 2 C 0.01 0.59 5.47 84.65 0.46 1.06 15 3 Si 0.95 40.71 27.47 68.60 1.88 42.60 15 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 15 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 15 7 C -0.52 -28.01 9.65 25.60 0.25 -27.76 15 8 H 0.03 1.75 7.98 -2.91 -0.02 1.72 15 9 C 0.02 0.80 4.18 29.10 0.12 0.93 15 10 C 0.00 -0.15 5.07 -19.82 -0.10 -0.25 15 11 C -0.13 -3.61 9.67 22.08 0.21 -3.40 15 12 C 0.07 1.57 10.99 83.23 0.91 2.48 15 13 N -0.40 -11.25 2.95 -356.38 -1.05 -12.30 15 14 C 0.13 3.17 12.97 179.85 2.33 5.50 15 15 N -0.30 -10.60 12.19 -59.48 -0.72 -11.32 15 16 N -0.36 -14.48 12.31 -55.40 -0.68 -15.16 15 17 C 0.20 7.33 7.92 134.07 1.06 8.39 15 18 C -0.13 -5.15 9.75 22.39 0.22 -4.93 15 19 H 0.27 15.07 8.31 -92.70 -0.77 14.29 15 20 H 0.04 1.52 7.14 -2.39 -0.02 1.50 15 21 H 0.05 2.04 7.52 -2.38 -0.02 2.03 15 22 H 0.18 3.87 8.06 -2.91 -0.02 3.84 15 23 H 0.23 1.97 8.06 -2.91 -0.02 1.94 15 24 H 0.28 3.05 8.06 -2.91 -0.02 3.02 15 25 H 0.14 5.47 8.06 -2.91 -0.02 5.45 15 Total: -1.00 -74.01 228.48 6.34 -67.67 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.14 Total: 3.39 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 5.47 Total: -17.99 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -2.16 Total: -95.67 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.60 kcal Total: -74.01 6.34 -67.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240408.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.166 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds