Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00110 * 2 1 4 4 H 1.48493 * 109.47005 * 239.99517 * 3 2 1 5 5 H 1.48505 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47173 * 119.99319 * 3 2 1 7 7 C 1.37873 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99868 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.73290 * 303.40971 * 9 7 2 11 11 C 1.54672 * 110.56816 * 67.37886 * 9 7 2 12 12 C 1.51383 * 105.06727 * 144.78628 * 11 9 7 13 13 C 1.38569 * 130.35515 * 162.25006 * 12 11 9 14 14 C 1.38142 * 120.37675 * 180.02562 * 13 12 11 15 15 C 1.38122 * 120.01895 * 359.97438 * 14 13 12 16 16 C 1.38784 * 119.85027 * 359.97438 * 15 14 13 17 17 N 1.39671 * 119.96746 * 179.97438 * 16 15 14 18 18 C 1.38092 * 109.75618 * 342.46180 * 12 11 9 19 19 C 1.51354 * 109.79827 * 0.11611 * 18 12 11 20 20 H 0.97007 * 120.00034 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.83862 * 25.64020 * 11 9 7 22 22 H 1.09010 * 109.87125 * 263.42634 * 11 9 7 23 23 H 1.08002 * 119.80562 * 359.97438 * 13 12 11 24 24 H 1.08001 * 119.98647 * 180.02562 * 14 13 12 25 25 H 1.08001 * 120.07508 * 180.02562 * 15 14 13 26 26 H 0.97001 * 120.00529 * 0.02562 * 17 16 15 27 27 H 0.97005 * 119.99745 * 179.72458 * 17 16 15 28 28 H 1.08999 * 110.30724 * 136.31974 * 19 18 12 29 29 H 1.09004 * 110.30487 * 258.37771 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5717 -2.5524 0.8512 11 6 0.4975 -2.6915 -1.3364 12 6 0.5602 -4.1785 -1.6131 13 6 -0.1967 -4.9651 -2.4666 14 6 0.0393 -6.3231 -2.5585 15 6 1.0348 -6.9045 -1.7977 16 6 1.7967 -6.1213 -0.9420 17 7 2.8036 -6.7068 -0.1712 18 6 1.5538 -4.7545 -0.8462 19 6 2.2260 -3.6957 0.0011 20 1 -0.4850 0.8401 -0.0004 21 1 0.9836 -2.1366 -2.1389 22 1 -0.5386 -2.3705 -1.2273 23 1 -0.9762 -4.5140 -3.0627 24 1 -0.5542 -6.9302 -3.2261 25 1 1.2204 -7.9660 -1.8692 26 1 2.9704 -7.6602 -0.2343 27 1 3.3390 -6.1591 0.4241 28 1 2.3745 -4.0622 1.0169 29 1 3.1805 -3.4081 -0.4398 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = 9.089956 kcal Electronic energy + Delta-G solvation = -12586.829639 eV Core-core repulsion = 10473.582709 eV Total energy + Delta-G solvation = -2113.246931 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.35579 -35.45296 -33.85712 -32.17246 -28.68005 -28.17100 -26.05464 -24.60312 -21.01339 -20.37342 -19.33516 -16.62068 -16.19441 -15.82281 -14.82505 -14.46688 -14.07073 -13.46082 -12.93857 -12.38063 -12.22511 -11.80748 -11.56354 -10.98423 -10.80365 -10.57768 -10.34535 -10.26752 -10.07336 -9.82305 -9.24546 -8.90376 -8.42468 -7.67970 -6.96070 -6.01259 -4.04580 2.07803 2.23819 3.33012 3.37849 3.40192 4.30148 4.44394 4.49998 5.25401 5.41086 5.48757 5.76467 5.95845 6.18062 6.30204 6.38324 6.49166 6.69018 6.87910 6.96748 7.07645 7.12818 7.29104 7.40535 7.62704 7.66097 7.85700 7.98374 8.00746 8.15697 8.44168 8.98105 9.59801 11.08842 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055354 B = 0.008884 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.709534 B = 3150.961811 C = 3521.944209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.056 3.944 10 H 0.038 0.962 11 C -0.066 4.066 12 C -0.037 4.037 13 C -0.175 4.175 14 C -0.085 4.085 15 C -0.217 4.217 16 C 0.217 3.783 17 N -0.884 5.884 18 C -0.169 4.169 19 C -0.067 4.067 20 H 0.261 0.739 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.390 0.610 27 H 0.396 0.604 28 H 0.046 0.954 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -10.358 -2.263 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.038 3.962 10 H 0.056 0.944 11 C -0.104 4.104 12 C -0.038 4.038 13 C -0.195 4.195 14 C -0.103 4.103 15 C -0.240 4.240 16 C 0.115 3.885 17 N -0.424 5.424 18 C -0.173 4.173 19 C -0.104 4.104 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.127 0.873 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.217 0.783 27 H 0.224 0.776 28 H 0.064 0.936 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.087 -10.199 -2.285 10.658 hybrid contribution 0.657 0.643 0.101 0.924 sum 2.744 -9.557 -2.184 10.180 Atomic orbital electron populations 1.69958 1.05904 1.26703 1.50125 1.24990 0.94842 0.99059 0.94959 0.86680 0.79620 0.83209 0.78616 1.20254 1.21324 1.20281 1.21093 0.92762 0.90250 1.51234 0.92504 1.19394 0.92532 0.91247 0.93030 0.94401 1.21344 1.01887 0.86882 1.00268 1.21157 0.92469 0.97867 0.92291 1.20450 1.02729 0.93423 1.02917 1.20604 0.96901 0.94571 0.98270 1.20264 1.01776 0.98474 1.03506 1.17452 0.88983 0.90913 0.91200 1.42392 1.39688 1.10655 1.49619 1.20471 1.01528 0.91768 1.03531 1.21113 0.99474 0.93865 0.95935 0.92913 0.91195 0.91468 0.87255 0.87002 0.87215 0.78345 0.77593 0.93560 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.76 55.43 0.71 -24.80 15 2 C 0.06 1.75 5.36 -17.82 -0.10 1.66 15 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -14.08 8.38 -34.44 -0.29 -14.37 15 8 H 0.06 1.52 7.61 -52.49 -0.40 1.12 15 9 C 0.06 1.43 2.93 -90.18 -0.26 1.16 15 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 11 C -0.07 -1.60 5.67 -26.67 -0.15 -1.75 15 12 C -0.04 -0.79 6.13 -104.22 -0.64 -1.43 15 13 C -0.18 -3.27 10.03 -39.49 -0.40 -3.67 15 14 C -0.08 -1.39 10.04 -39.66 -0.40 -1.78 15 15 C -0.22 -3.50 9.89 -39.42 -0.39 -3.89 15 16 C 0.22 3.79 6.75 -83.74 -0.57 3.23 15 17 N -0.88 -12.05 9.09 32.43 0.29 -11.76 15 18 C -0.17 -3.44 6.10 -104.01 -0.63 -4.07 15 19 C -0.07 -1.43 5.79 -26.85 -0.16 -1.59 15 20 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 21 H 0.07 1.75 7.91 -51.93 -0.41 1.34 15 22 H 0.07 1.70 8.08 -51.92 -0.42 1.28 15 23 H 0.11 1.87 8.06 -52.49 -0.42 1.44 15 24 H 0.11 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.11 1.45 8.06 -52.49 -0.42 1.03 15 26 H 0.39 4.17 8.84 -40.82 -0.36 3.80 15 27 H 0.40 5.14 8.36 -40.82 -0.34 4.80 15 28 H 0.05 0.92 8.10 -51.93 -0.42 0.50 15 29 H 0.06 1.36 7.76 -51.93 -0.40 0.96 15 LS Contribution 247.08 15.07 3.72 3.72 Total: -1.00 -29.16 247.08 -7.86 -37.01 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.58 Total: 6.19 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.98 Total: -26.50 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 1.00 Total: -36.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.16 -7.86 -37.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.103 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds