Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00110 * 2 1 4 4 H 1.48493 * 109.47005 * 239.99517 * 3 2 1 5 5 H 1.48505 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47173 * 119.99319 * 3 2 1 7 7 C 1.37873 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99868 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.73290 * 303.40971 * 9 7 2 11 11 C 1.54672 * 110.56816 * 67.37886 * 9 7 2 12 12 C 1.51383 * 105.06727 * 144.78628 * 11 9 7 13 13 C 1.38569 * 130.35515 * 162.25006 * 12 11 9 14 14 C 1.38142 * 120.37675 * 180.02562 * 13 12 11 15 15 C 1.38122 * 120.01895 * 359.97438 * 14 13 12 16 16 C 1.38784 * 119.85027 * 359.97438 * 15 14 13 17 17 N 1.39671 * 119.96746 * 179.97438 * 16 15 14 18 18 C 1.38092 * 109.75618 * 342.46180 * 12 11 9 19 19 C 1.51354 * 109.79827 * 0.11611 * 18 12 11 20 20 H 0.97007 * 120.00034 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.83862 * 25.64020 * 11 9 7 22 22 H 1.09010 * 109.87125 * 263.42634 * 11 9 7 23 23 H 1.08002 * 119.80562 * 359.97438 * 13 12 11 24 24 H 1.08001 * 119.98647 * 180.02562 * 14 13 12 25 25 H 1.08001 * 120.07508 * 180.02562 * 15 14 13 26 26 H 0.97001 * 120.00529 * 0.02562 * 17 16 15 27 27 H 0.97005 * 119.99745 * 179.72458 * 17 16 15 28 28 H 1.08999 * 110.30724 * 136.31974 * 19 18 12 29 29 H 1.09004 * 110.30487 * 258.37771 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5717 -2.5524 0.8512 11 6 0.4975 -2.6915 -1.3364 12 6 0.5602 -4.1785 -1.6131 13 6 -0.1967 -4.9651 -2.4666 14 6 0.0393 -6.3231 -2.5585 15 6 1.0348 -6.9045 -1.7977 16 6 1.7967 -6.1213 -0.9420 17 7 2.8036 -6.7068 -0.1712 18 6 1.5538 -4.7545 -0.8462 19 6 2.2260 -3.6957 0.0011 20 1 -0.4850 0.8401 -0.0004 21 1 0.9836 -2.1366 -2.1389 22 1 -0.5386 -2.3705 -1.2273 23 1 -0.9762 -4.5140 -3.0627 24 1 -0.5542 -6.9302 -3.2261 25 1 1.2204 -7.9660 -1.8692 26 1 2.9704 -7.6602 -0.2343 27 1 3.3390 -6.1591 0.4241 28 1 2.3745 -4.0622 1.0169 29 1 3.1805 -3.4081 -0.4398 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257892.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -8.551621 kcal Electronic energy + Delta-G solvation = -12587.594635 eV Core-core repulsion = 10473.582709 eV Total energy + Delta-G solvation = -2114.011927 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.85298 -37.11435 -35.20180 -34.15726 -30.24110 -29.81669 -27.64869 -26.55211 -22.58953 -21.82626 -21.12430 -18.50284 -17.70785 -17.15092 -16.53030 -16.11747 -15.74287 -15.07030 -14.36650 -14.03542 -13.82313 -13.49578 -13.37597 -12.88297 -12.70257 -12.42825 -12.01206 -11.82156 -11.71554 -11.26572 -11.17331 -10.93389 -10.53902 -9.23440 -8.24714 -8.13619 -6.24494 0.65128 0.83366 1.42515 1.44424 1.52047 2.43566 3.06762 3.15383 3.17931 3.88821 4.11628 4.29432 4.52182 4.63212 4.67917 4.82476 4.91141 5.14584 5.14729 5.26505 5.41559 5.50450 5.58209 5.72610 5.80325 5.90650 6.04013 6.20259 6.34727 6.70843 6.85576 7.13739 7.43608 8.96398 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055354 B = 0.008884 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.709534 B = 3150.961811 C = 3521.944209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.046 3.954 10 H 0.003 0.997 11 C -0.053 4.053 12 C -0.067 4.067 13 C -0.191 4.191 14 C -0.073 4.073 15 C -0.210 4.210 16 C 0.220 3.780 17 N -0.869 5.869 18 C -0.193 4.193 19 C -0.054 4.054 20 H 0.262 0.738 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.116 0.884 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.408 0.592 27 H 0.400 0.600 28 H 0.057 0.943 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 -12.455 -2.821 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.021 0.979 11 C -0.091 4.091 12 C -0.067 4.067 13 C -0.211 4.211 14 C -0.091 4.091 15 C -0.233 4.233 16 C 0.115 3.885 17 N -0.409 5.409 18 C -0.197 4.197 19 C -0.091 4.091 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.134 0.866 24 H 0.169 0.831 25 H 0.167 0.833 26 H 0.238 0.762 27 H 0.228 0.772 28 H 0.076 0.924 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.114 -12.330 -2.828 13.028 hybrid contribution 0.334 1.180 0.277 1.257 sum 3.447 -11.150 -2.551 11.947 Atomic orbital electron populations 1.70100 1.07437 1.27489 1.51001 1.25821 0.95667 1.02648 0.94538 0.85612 0.78360 0.78724 0.78985 1.19536 1.21006 1.19334 1.21454 0.93048 0.91495 1.51128 0.92339 1.19335 0.93025 0.92605 0.92286 0.97869 1.20983 0.99539 0.89613 0.98974 1.20951 0.94836 0.96067 0.94875 1.20639 1.02876 0.94707 1.02852 1.21038 0.96660 0.93520 0.97924 1.20745 1.00467 1.00230 1.01844 1.17547 0.89669 0.89771 0.91512 1.42342 1.38353 1.11729 1.48510 1.20358 1.02084 0.93129 1.04136 1.20847 0.98224 0.92961 0.97060 0.92946 0.93430 0.94287 0.86582 0.83080 0.83272 0.76204 0.77158 0.92440 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.00 12.76 21.45 0.27 -54.73 15 2 C 0.01 0.69 5.36 84.65 0.45 1.15 15 3 Si 0.96 44.12 29.54 68.60 2.03 46.15 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 7 C -0.53 -30.16 8.38 25.60 0.21 -29.95 15 8 H 0.06 3.20 7.61 -2.91 -0.02 3.17 15 9 C 0.05 2.45 2.93 -10.51 -0.03 2.42 15 10 H 0.00 0.18 8.14 -2.39 -0.02 0.16 15 11 C -0.05 -2.73 5.67 30.63 0.17 -2.55 15 12 C -0.07 -2.89 6.13 -19.60 -0.12 -3.01 15 13 C -0.19 -6.93 10.03 22.33 0.22 -6.70 15 14 C -0.07 -2.11 10.04 22.22 0.22 -1.89 15 15 C -0.21 -5.82 9.89 22.37 0.22 -5.60 15 16 C 0.22 7.05 6.75 38.24 0.26 7.31 15 17 N -0.87 -20.74 9.09 -51.30 -0.47 -21.20 15 18 C -0.19 -7.76 6.10 -19.47 -0.12 -7.88 15 19 C -0.05 -2.35 5.79 30.51 0.18 -2.18 15 20 H 0.26 14.83 8.31 -92.70 -0.77 14.06 15 21 H 0.05 2.55 7.91 -2.39 -0.02 2.53 15 22 H 0.04 2.12 8.08 -2.38 -0.02 2.10 15 23 H 0.12 3.92 8.06 -2.91 -0.02 3.90 15 24 H 0.15 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.15 2.99 8.06 -2.91 -0.02 2.97 15 26 H 0.41 6.93 8.84 -92.71 -0.82 6.11 15 27 H 0.40 9.30 8.36 -92.70 -0.78 8.53 15 28 H 0.06 2.30 8.10 -2.39 -0.02 2.28 15 29 H 0.06 2.61 7.76 -2.38 -0.02 2.59 15 Total: -1.00 -64.91 247.08 3.08 -61.84 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.43 Total: 16.83 kcal Atomic # 6 Polarization: -50.57 SS G_CDS: 1.68 Total: -48.89 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -0.19 Total: -75.93 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.91 3.08 -61.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257892.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.284 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds