Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 110.72457 * 303.12406 * 9 7 2 11 11 C 1.54337 * 110.82116 * 66.74175 * 9 7 2 12 12 C 1.51386 * 105.17563 * 144.61089 * 11 9 7 13 13 C 1.38574 * 130.29725 * 162.76635 * 12 11 9 14 14 C 1.37960 * 120.31475 * 180.02562 * 13 12 11 15 15 C 1.38923 * 119.85987 * 0.02562 * 14 13 12 16 16 N 1.39675 * 120.11529 * 180.02562 * 15 14 13 17 17 C 1.38773 * 119.77824 * 359.95951 * 15 14 13 18 18 C 1.38289 * 109.73729 * 342.78068 * 12 11 9 19 19 C 1.51386 * 109.74626 * 0.02562 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09007 * 110.30166 * 263.53140 * 11 9 7 22 22 H 1.08994 * 110.30356 * 25.67802 * 11 9 7 23 23 H 1.08001 * 119.84404 * 359.97438 * 13 12 11 24 24 H 1.08005 * 120.06975 * 179.97438 * 14 13 12 25 25 H 0.97003 * 119.99681 * 359.97438 * 16 15 14 26 26 H 0.97001 * 120.00589 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.92197 * 180.02562 * 17 15 14 28 28 H 1.09000 * 110.30330 * 258.26639 * 19 18 12 29 29 H 1.08997 * 110.30186 * 136.11339 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5720 -2.5564 0.8454 11 6 0.4890 -2.6867 -1.3344 12 6 0.5544 -4.1715 -1.6226 13 6 -0.2016 -4.9516 -2.4829 14 6 0.0366 -6.3066 -2.5851 15 6 1.0386 -6.8923 -1.8216 16 7 1.2846 -8.2636 -1.9213 17 6 1.7953 -6.1101 -0.9606 18 6 1.5530 -4.7514 -0.8618 19 6 2.2258 -3.6956 -0.0105 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5477 -2.3682 -1.2242 22 1 0.9753 -2.1249 -2.1317 23 1 -0.9815 -4.4968 -3.0757 24 1 -0.5553 -6.9110 -3.2567 25 1 0.7551 -8.8088 -2.5241 26 1 1.9844 -8.6710 -1.3872 27 1 2.5751 -6.5629 -0.3663 28 1 3.1789 -3.4047 -0.4520 29 1 2.3752 -4.0662 1.0036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265589.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = 9.881862 kcal Electronic energy + Delta-G solvation = -12455.246228 eV Core-core repulsion = 10342.033637 eV Total energy + Delta-G solvation = -2113.212591 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.29642 -36.03443 -33.21126 -31.75865 -30.06967 -27.66305 -25.80882 -24.38530 -21.56134 -20.03992 -19.40180 -16.60433 -16.25520 -15.93129 -14.72411 -14.34031 -14.09537 -13.45984 -12.87612 -12.48825 -12.33759 -11.94919 -11.50865 -11.02940 -10.91126 -10.57739 -10.45722 -10.13669 -10.03706 -9.44156 -9.21816 -8.80310 -8.39674 -8.07032 -6.85183 -5.99086 -4.02123 2.02575 2.24806 3.33109 3.39843 3.42948 4.14329 4.46210 4.48575 5.26370 5.39968 5.52126 5.78168 6.04836 6.11787 6.20111 6.49662 6.54635 6.65644 6.74825 6.97511 7.10187 7.14745 7.35223 7.41596 7.62671 7.72471 7.86442 7.94741 8.01927 8.03467 8.46866 9.00887 9.62056 11.11028 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.075404 B = 0.007783 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.243364 B = 3596.700662 C = 3833.679706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.054 3.946 10 H 0.037 0.963 11 C -0.058 4.058 12 C -0.134 4.134 13 C -0.074 4.074 14 C -0.206 4.206 15 C 0.194 3.806 16 N -0.888 5.888 17 C -0.191 4.191 18 C -0.046 4.046 19 C -0.081 4.081 20 H 0.260 0.740 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.392 0.608 26 H 0.392 0.608 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -11.481 -3.520 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.036 3.964 10 H 0.055 0.945 11 C -0.095 4.095 12 C -0.136 4.136 13 C -0.093 4.093 14 C -0.228 4.228 15 C 0.092 3.908 16 N -0.428 5.428 17 C -0.214 4.214 18 C -0.047 4.047 19 C -0.118 4.118 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.219 0.781 26 H 0.219 0.781 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.055 -11.280 -3.506 11.859 hybrid contribution 0.436 0.435 -0.146 0.633 sum 1.491 -10.846 -3.651 11.540 Atomic orbital electron populations 1.69974 1.05896 1.26522 1.50281 1.24993 0.94842 0.99054 0.95013 0.86621 0.79890 0.83571 0.78078 1.20710 1.21285 1.19912 1.21138 0.92806 0.90238 1.51021 0.92419 1.19358 0.92493 0.91211 0.93380 0.94458 1.21136 1.01454 0.87017 0.99931 1.21155 0.96714 0.98370 0.97327 1.20402 0.98640 0.92554 0.97720 1.20300 1.02005 0.95355 1.05167 1.17503 0.94462 0.83924 0.94872 1.42297 1.43289 1.05807 1.51428 1.19975 1.03818 0.93381 1.04222 1.20764 0.95336 0.92603 0.95983 1.21355 0.99810 0.94052 0.96555 0.93019 0.91881 0.91814 0.86982 0.87167 0.78106 0.78069 0.87338 0.91035 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 12.74 55.43 0.71 -24.91 15 2 C 0.06 1.75 5.36 -17.82 -0.10 1.65 15 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.51 -14.13 8.38 -34.44 -0.29 -14.42 15 8 H 0.06 1.55 7.61 -52.49 -0.40 1.15 15 9 C 0.05 1.38 2.90 -90.37 -0.26 1.12 15 10 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 11 C -0.06 -1.40 5.66 -26.85 -0.15 -1.55 15 12 C -0.13 -2.86 6.14 -104.14 -0.64 -3.49 15 13 C -0.07 -1.38 10.03 -39.56 -0.40 -1.77 15 14 C -0.21 -3.36 9.90 -39.43 -0.39 -3.75 15 15 C 0.19 3.09 6.75 -83.83 -0.57 2.53 15 16 N -0.89 -10.23 9.09 32.39 0.29 -9.93 15 17 C -0.19 -3.39 9.89 -39.33 -0.39 -3.77 15 18 C -0.05 -0.95 6.13 -104.22 -0.64 -1.59 15 19 C -0.08 -1.76 6.30 -26.85 -0.17 -1.93 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.81 15 21 H 0.06 1.61 8.08 -51.92 -0.42 1.19 15 22 H 0.06 1.61 7.89 -51.93 -0.41 1.20 15 23 H 0.11 1.87 8.06 -52.49 -0.42 1.45 15 24 H 0.11 1.49 8.06 -52.48 -0.42 1.07 15 25 H 0.39 3.64 8.84 -40.82 -0.36 3.28 15 26 H 0.39 3.79 8.84 -40.82 -0.36 3.43 15 27 H 0.11 1.69 8.06 -52.49 -0.42 1.27 15 28 H 0.07 1.54 7.75 -51.93 -0.40 1.14 15 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 247.92 15.07 3.74 3.74 Total: -1.00 -29.45 247.92 -7.87 -37.32 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.60 Total: 4.53 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -3.99 Total: -26.99 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 1.00 Total: -34.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.45 -7.87 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265589.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.202 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds