Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 110.72457 * 303.12406 * 9 7 2 11 11 C 1.54337 * 110.82116 * 66.74175 * 9 7 2 12 12 C 1.51386 * 105.17563 * 144.61089 * 11 9 7 13 13 C 1.38574 * 130.29725 * 162.76635 * 12 11 9 14 14 C 1.37960 * 120.31475 * 180.02562 * 13 12 11 15 15 C 1.38923 * 119.85987 * 0.02562 * 14 13 12 16 16 N 1.39675 * 120.11529 * 180.02562 * 15 14 13 17 17 C 1.38773 * 119.77824 * 359.95951 * 15 14 13 18 18 C 1.38289 * 109.73729 * 342.78068 * 12 11 9 19 19 C 1.51386 * 109.74626 * 0.02562 * 18 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09007 * 110.30166 * 263.53140 * 11 9 7 22 22 H 1.08994 * 110.30356 * 25.67802 * 11 9 7 23 23 H 1.08001 * 119.84404 * 359.97438 * 13 12 11 24 24 H 1.08005 * 120.06975 * 179.97438 * 14 13 12 25 25 H 0.97003 * 119.99681 * 359.97438 * 16 15 14 26 26 H 0.97001 * 120.00589 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.92197 * 180.02562 * 17 15 14 28 28 H 1.09000 * 110.30330 * 258.26639 * 19 18 12 29 29 H 1.08997 * 110.30186 * 136.11339 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5720 -2.5564 0.8454 11 6 0.4890 -2.6867 -1.3344 12 6 0.5544 -4.1715 -1.6226 13 6 -0.2016 -4.9516 -2.4829 14 6 0.0366 -6.3066 -2.5851 15 6 1.0386 -6.8923 -1.8216 16 7 1.2846 -8.2636 -1.9213 17 6 1.7953 -6.1101 -0.9606 18 6 1.5530 -4.7514 -0.8618 19 6 2.2258 -3.6956 -0.0105 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5477 -2.3682 -1.2242 22 1 0.9753 -2.1249 -2.1317 23 1 -0.9815 -4.4968 -3.0757 24 1 -0.5553 -6.9110 -3.2567 25 1 0.7551 -8.8088 -2.5241 26 1 1.9844 -8.6710 -1.3872 27 1 2.5751 -6.5629 -0.3663 28 1 3.1789 -3.4047 -0.4520 29 1 2.3752 -4.0662 1.0036 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261265589.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = -8.069055 kcal Electronic energy + Delta-G solvation = -12456.024638 eV Core-core repulsion = 10342.033637 eV Total energy + Delta-G solvation = -2113.991001 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.78872 -37.57331 -34.90165 -33.46538 -31.59777 -29.33890 -27.50283 -26.22936 -23.09450 -21.47159 -21.25024 -18.48257 -17.61637 -17.26390 -16.56003 -15.91850 -15.77366 -15.09119 -14.22231 -14.02277 -13.81504 -13.78536 -13.36389 -12.93131 -12.78934 -12.42085 -12.15349 -11.93763 -11.52974 -11.15515 -11.10484 -10.71665 -10.50128 -9.51235 -8.17289 -8.11255 -6.22839 0.61806 0.81063 1.43229 1.43522 1.54382 2.44571 3.04315 3.09207 3.19283 3.90092 4.13235 4.29363 4.57242 4.62630 4.66956 4.71782 5.02341 5.12567 5.20294 5.21609 5.34173 5.52377 5.64076 5.66003 5.79983 5.93251 6.09630 6.15274 6.36927 6.72448 6.87521 7.14626 7.44975 8.97949 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.075404 B = 0.007783 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.243364 B = 3596.700662 C = 3833.679706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.003 0.997 11 C -0.043 4.043 12 C -0.173 4.173 13 C -0.076 4.076 14 C -0.202 4.202 15 C 0.210 3.790 16 N -0.866 5.866 17 C -0.198 4.198 18 C -0.060 4.060 19 C -0.072 4.072 20 H 0.261 0.739 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.123 0.877 24 H 0.146 0.854 25 H 0.408 0.592 26 H 0.405 0.595 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -13.610 -4.288 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.025 3.975 10 H 0.022 0.978 11 C -0.081 4.081 12 C -0.174 4.174 13 C -0.095 4.095 14 C -0.225 4.225 15 C 0.105 3.895 16 N -0.408 5.408 17 C -0.221 4.221 18 C -0.061 4.061 19 C -0.109 4.109 20 H 0.070 0.930 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.141 0.859 24 H 0.164 0.836 25 H 0.237 0.763 26 H 0.235 0.765 27 H 0.149 0.851 28 H 0.088 0.912 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.859 -13.467 -4.279 14.252 hybrid contribution 0.161 0.940 0.071 0.956 sum 2.019 -12.527 -4.208 13.368 Atomic orbital electron populations 1.70112 1.07418 1.27361 1.51111 1.25826 0.95686 1.02646 0.94599 0.85551 0.78771 0.79059 0.78262 1.20124 1.20881 1.18956 1.21496 0.93076 0.91505 1.50955 0.92300 1.19307 0.92997 0.92503 0.92695 0.97838 1.20757 0.99041 0.89752 0.98537 1.20908 0.99510 0.96527 1.00504 1.20596 0.98320 0.93609 0.96976 1.20640 1.02075 0.94519 1.05230 1.17590 0.93145 0.85591 0.93218 1.42250 1.43305 1.04036 1.51160 1.20146 1.04771 0.92167 1.05003 1.20650 0.95516 0.93758 0.96166 1.21137 0.98739 0.93260 0.97735 0.92991 0.94719 0.94205 0.85877 0.83601 0.76252 0.76542 0.85084 0.91184 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 12.74 21.45 0.27 -54.93 15 2 C 0.01 0.64 5.36 84.66 0.45 1.10 15 3 Si 0.96 44.41 29.54 68.60 2.03 46.43 15 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.53 -30.34 8.38 25.60 0.21 -30.12 15 8 H 0.06 3.25 7.61 -2.91 -0.02 3.22 15 9 C 0.04 2.33 2.90 -10.63 -0.03 2.30 15 10 H 0.00 0.20 8.14 -2.39 -0.02 0.18 15 11 C -0.04 -2.21 5.66 30.52 0.17 -2.04 15 12 C -0.17 -7.48 6.14 -19.55 -0.12 -7.60 15 13 C -0.08 -2.74 10.03 22.28 0.22 -2.51 15 14 C -0.20 -5.88 9.90 22.37 0.22 -5.66 15 15 C 0.21 5.85 6.75 38.18 0.26 6.11 15 16 N -0.87 -15.64 9.09 -51.45 -0.47 -16.11 15 17 C -0.20 -6.50 9.89 22.43 0.22 -6.27 15 18 C -0.06 -2.46 6.13 -19.60 -0.12 -2.58 15 19 C -0.07 -3.19 6.30 30.52 0.19 -3.00 15 20 H 0.26 14.81 8.31 -92.70 -0.77 14.04 15 21 H 0.03 1.89 8.08 -2.38 -0.02 1.87 15 22 H 0.04 2.15 7.89 -2.39 -0.02 2.13 15 23 H 0.12 4.01 8.06 -2.91 -0.02 3.98 15 24 H 0.15 3.19 8.06 -2.91 -0.02 3.17 15 25 H 0.41 5.34 8.84 -92.71 -0.82 4.52 15 26 H 0.41 5.80 8.84 -92.71 -0.82 4.98 15 27 H 0.13 3.63 8.06 -2.91 -0.02 3.61 15 28 H 0.07 3.07 7.75 -2.39 -0.02 3.05 15 29 H 0.06 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -65.50 247.92 3.04 -62.46 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.48 Total: 12.41 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 1.69 Total: -50.27 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -0.19 Total: -71.04 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.50 3.04 -62.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265589.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.391 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds