Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 119.99738 * 2 1 4 4 H 1.48504 * 109.46935 * 275.41116 * 3 2 1 5 5 H 1.48501 * 109.47429 * 35.41200 * 3 2 1 6 6 H 1.48507 * 109.47077 * 155.41866 * 3 2 1 7 7 C 1.39947 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99693 * 341.74241 * 7 2 1 9 9 C 1.41398 * 119.99512 * 161.73923 * 7 2 1 10 10 C 1.40737 * 120.35277 * 330.27162 * 9 7 2 11 11 C 1.37351 * 119.60656 * 180.19662 * 10 9 7 12 12 C 1.39198 * 120.72879 * 0.20488 * 11 10 9 13 13 C 1.38327 * 120.10751 * 359.26612 * 12 11 10 14 14 C 1.38080 * 120.08905 * 0.87382 * 13 12 11 15 15 C 1.50767 * 121.61738 * 180.85016 * 13 12 11 16 16 C 1.53211 * 109.86109 * 342.48581 * 15 13 12 17 17 N 1.47158 * 108.20940 * 50.96738 * 16 15 13 18 18 C 1.46601 * 110.25779 * 288.28667 * 17 16 15 19 19 H 0.97003 * 119.99533 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.19643 * 0.17666 * 10 9 7 21 21 H 1.07997 * 119.63723 * 179.97438 * 11 10 9 22 22 H 1.07999 * 119.92085 * 179.53118 * 14 13 12 23 23 H 1.08997 * 109.38074 * 103.32531 * 15 13 12 24 24 H 1.08998 * 109.38278 * 223.01042 * 15 13 12 25 25 H 1.08996 * 110.05223 * 291.19568 * 16 15 13 26 26 H 1.09004 * 109.67018 * 170.51256 * 16 15 13 27 27 H 1.00904 * 110.99906 * 51.70800 * 17 16 15 28 28 H 1.09003 * 109.27092 * 292.49181 * 18 17 16 29 29 H 1.09005 * 109.26907 * 173.01901 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5015 2.6170 0.8113 6 1 3.5924 1.4099 0.5824 7 6 2.0080 -1.2120 0.0005 8 1 1.5087 -2.1236 0.2940 9 6 3.3686 -1.2429 -0.3832 10 6 3.8664 -0.3118 -1.3137 11 6 5.1897 -0.3583 -1.6786 12 6 6.0423 -1.3186 -1.1414 13 6 5.5653 -2.2313 -0.2179 14 6 4.2376 -2.2039 0.1603 15 6 6.4629 -3.2735 0.3996 16 6 7.7355 -3.4277 -0.4395 17 7 8.3090 -2.0897 -0.6552 18 6 7.4800 -1.3273 -1.5937 19 1 -0.4849 0.8401 0.0004 20 1 3.2117 0.4347 -1.7386 21 1 5.5722 0.3557 -2.3929 22 1 3.8664 -2.9226 0.8759 23 1 6.7201 -2.9734 1.4153 24 1 5.9407 -4.2298 0.4277 25 1 7.4965 -3.8829 -1.4006 26 1 8.4528 -4.0520 0.0932 27 1 8.4134 -1.5959 0.2185 28 1 7.5435 -1.7830 -2.5819 29 1 7.8466 -0.3021 -1.6466 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = 5.169473 kcal Electronic energy + Delta-G solvation = -12716.507185 eV Core-core repulsion = 10603.090250 eV Total energy + Delta-G solvation = -2113.416935 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.98249 -36.04034 -33.38923 -31.79484 -30.34230 -28.29595 -25.76570 -22.84880 -22.44388 -20.86447 -19.52727 -17.20443 -15.71422 -15.32271 -14.77432 -14.37730 -13.78970 -13.65004 -13.06803 -12.70737 -12.49806 -12.10748 -11.74205 -11.48867 -11.30090 -11.05051 -10.74444 -10.37472 -10.16606 -10.00409 -9.57307 -9.15654 -8.08657 -7.64449 -7.45557 -6.97673 -4.50492 2.52508 2.59173 3.07986 3.18777 3.28947 3.95693 4.39901 4.70441 5.30245 5.32045 5.51928 5.62149 5.75617 5.93178 6.07611 6.15668 6.19487 6.24948 6.31969 6.50768 6.75698 6.89549 7.17562 7.21162 7.39348 7.53537 7.61187 7.82661 7.84791 8.09337 8.32735 8.63125 8.77675 10.04965 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.056070 B = 0.010297 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.255569 B = 2718.590257 C = 3033.928418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.094 3.906 10 C -0.234 4.234 11 C -0.071 4.071 12 C -0.246 4.246 13 C -0.046 4.046 14 C -0.211 4.211 15 C -0.114 4.114 16 C 0.059 3.941 17 N -0.685 5.685 18 C 0.117 3.883 19 H 0.285 0.715 20 H 0.100 0.900 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.337 0.663 28 H 0.064 0.936 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 -1.003 -0.280 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.169 1.169 7 C -0.478 4.478 8 H 0.108 0.892 9 C 0.091 3.909 10 C -0.253 4.253 11 C -0.090 4.090 12 C -0.249 4.249 13 C -0.046 4.046 14 C -0.230 4.230 15 C -0.152 4.152 16 C -0.071 4.071 17 N -0.311 5.311 18 C -0.013 4.013 19 H 0.095 0.905 20 H 0.118 0.882 21 H 0.111 0.889 22 H 0.116 0.884 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.793 -1.133 -0.756 9.887 hybrid contribution -0.878 1.007 0.541 1.441 sum 8.915 -0.126 -0.216 8.919 Atomic orbital electron populations 1.69702 1.08092 1.30239 1.35292 1.26149 0.94695 1.01731 0.90853 0.86304 0.81241 0.79763 0.78800 1.19658 1.21807 1.16891 1.19483 0.93203 0.96113 1.39002 0.89241 1.17682 0.92942 0.90801 0.89434 1.21012 0.95592 1.04633 1.04042 1.20511 0.93615 0.96821 0.98082 1.19637 0.96483 1.02287 1.06487 1.19108 0.94057 0.95156 0.96291 1.20912 0.92364 1.04641 1.05095 1.21180 0.96722 0.98397 0.98920 1.22062 0.93853 0.91461 0.99728 1.61090 1.49259 1.04145 1.16643 1.20577 0.88236 0.97066 0.95401 0.90457 0.88233 0.88856 0.88377 0.91566 0.91362 0.91066 0.91221 0.84659 0.91814 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.76 13.93 55.55 0.77 -20.99 15 2 C 0.08 2.24 5.41 -17.34 -0.09 2.15 15 3 Si 0.91 21.07 24.52 -169.99 -4.17 16.90 15 4 H -0.27 -6.06 6.71 56.52 0.38 -5.68 15 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.25 -5.85 6.86 56.52 0.39 -5.46 15 7 C -0.45 -12.34 9.58 -37.74 -0.36 -12.70 15 8 H 0.09 2.57 8.06 -52.49 -0.42 2.14 15 9 C 0.09 2.43 5.10 -106.90 -0.55 1.89 15 10 C -0.23 -5.71 7.19 -38.96 -0.28 -5.99 15 11 C -0.07 -1.56 9.61 -39.55 -0.38 -1.94 15 12 C -0.25 -5.06 5.82 -104.23 -0.61 -5.66 15 13 C -0.05 -0.96 5.77 -104.61 -0.60 -1.56 15 14 C -0.21 -4.98 9.39 -38.79 -0.36 -5.34 15 15 C -0.11 -1.88 5.81 -27.74 -0.16 -2.04 15 16 C 0.06 0.86 6.64 -3.57 -0.02 0.83 15 17 N -0.68 -10.44 6.96 -114.96 -0.80 -11.24 15 18 C 0.12 1.96 6.33 -5.13 -0.03 1.93 15 19 H 0.29 6.93 8.30 -40.82 -0.34 6.59 15 20 H 0.10 2.43 4.73 -52.49 -0.25 2.18 15 21 H 0.09 1.78 8.06 -52.49 -0.42 1.36 15 22 H 0.10 2.22 8.06 -52.49 -0.42 1.80 15 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 25 H 0.07 1.07 8.05 -51.93 -0.42 0.65 15 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 27 H 0.34 4.90 8.73 -39.29 -0.34 4.56 15 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.06 1.02 8.13 -51.93 -0.42 0.59 15 LS Contribution 237.38 15.07 3.58 3.58 Total: -1.00 -27.55 237.38 -7.63 -35.18 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.56 Total: 5.02 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -3.45 Total: -28.45 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: -0.03 Total: -32.23 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.17 Total: 16.90 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.55 -7.63 -35.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.349 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds