Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 119.99738 * 2 1 4 4 H 1.48504 * 109.46935 * 275.41116 * 3 2 1 5 5 H 1.48501 * 109.47429 * 35.41200 * 3 2 1 6 6 H 1.48507 * 109.47077 * 155.41866 * 3 2 1 7 7 C 1.39947 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99693 * 341.74241 * 7 2 1 9 9 C 1.41398 * 119.99512 * 161.73923 * 7 2 1 10 10 C 1.40737 * 120.35277 * 330.27162 * 9 7 2 11 11 C 1.37351 * 119.60656 * 180.19662 * 10 9 7 12 12 C 1.39198 * 120.72879 * 0.20488 * 11 10 9 13 13 C 1.38327 * 120.10751 * 359.26612 * 12 11 10 14 14 C 1.38080 * 120.08905 * 0.87382 * 13 12 11 15 15 C 1.50767 * 121.61738 * 180.85016 * 13 12 11 16 16 C 1.53211 * 109.86109 * 342.48581 * 15 13 12 17 17 N 1.47158 * 108.20940 * 50.96738 * 16 15 13 18 18 C 1.46601 * 110.25779 * 288.28667 * 17 16 15 19 19 H 0.97003 * 119.99533 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.19643 * 0.17666 * 10 9 7 21 21 H 1.07997 * 119.63723 * 179.97438 * 11 10 9 22 22 H 1.07999 * 119.92085 * 179.53118 * 14 13 12 23 23 H 1.08997 * 109.38074 * 103.32531 * 15 13 12 24 24 H 1.08998 * 109.38278 * 223.01042 * 15 13 12 25 25 H 1.08996 * 110.05223 * 291.19568 * 16 15 13 26 26 H 1.09004 * 109.67018 * 170.51256 * 16 15 13 27 27 H 1.00904 * 110.99906 * 51.70800 * 17 16 15 28 28 H 1.09003 * 109.27092 * 292.49181 * 18 17 16 29 29 H 1.09005 * 109.26907 * 173.01901 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5015 2.6170 0.8113 6 1 3.5924 1.4099 0.5824 7 6 2.0080 -1.2120 0.0005 8 1 1.5087 -2.1236 0.2940 9 6 3.3686 -1.2429 -0.3832 10 6 3.8664 -0.3118 -1.3137 11 6 5.1897 -0.3583 -1.6786 12 6 6.0423 -1.3186 -1.1414 13 6 5.5653 -2.2313 -0.2179 14 6 4.2376 -2.2039 0.1603 15 6 6.4629 -3.2735 0.3996 16 6 7.7355 -3.4277 -0.4395 17 7 8.3090 -2.0897 -0.6552 18 6 7.4800 -1.3273 -1.5937 19 1 -0.4849 0.8401 0.0004 20 1 3.2117 0.4347 -1.7386 21 1 5.5722 0.3557 -2.3929 22 1 3.8664 -2.9226 0.8759 23 1 6.7201 -2.9734 1.4153 24 1 5.9407 -4.2298 0.4277 25 1 7.4965 -3.8829 -1.4006 26 1 8.4528 -4.0520 0.0932 27 1 8.4134 -1.5959 0.2185 28 1 7.5435 -1.7830 -2.5819 29 1 7.8466 -0.3021 -1.6466 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = -13.269985 kcal Electronic energy + Delta-G solvation = -12717.306780 eV Core-core repulsion = 10603.090250 eV Total energy + Delta-G solvation = -2114.216530 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.58326 -37.62472 -35.26334 -33.33046 -32.08751 -29.86843 -27.51686 -24.33860 -23.96178 -22.59839 -21.17977 -19.03504 -17.52279 -16.73280 -16.48511 -15.86825 -15.30370 -15.23695 -14.83016 -14.30748 -14.13405 -13.75221 -13.36677 -13.13502 -12.85291 -12.59461 -12.35029 -12.01100 -11.86235 -11.75707 -11.39583 -10.98590 -9.45015 -9.39768 -9.21525 -8.94022 -6.53508 0.71742 0.78387 1.21431 1.35808 1.43963 2.08173 2.51542 3.40714 3.49453 3.98103 4.18200 4.21645 4.32385 4.44505 4.59814 4.68874 4.81604 4.86287 4.96214 5.00678 5.09026 5.18407 5.35889 5.56095 5.70390 5.87257 5.90313 6.11932 6.22225 6.38846 6.52048 6.70934 6.79857 8.14973 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.056070 B = 0.010297 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.255569 B = 2718.590257 C = 3033.928418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.048 3.952 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.052 0.948 9 C 0.071 3.929 10 C -0.249 4.249 11 C -0.079 4.079 12 C -0.230 4.230 13 C -0.051 4.051 14 C -0.228 4.228 15 C -0.112 4.112 16 C 0.063 3.937 17 N -0.678 5.678 18 C 0.119 3.881 19 H 0.294 0.706 20 H 0.096 0.904 21 H 0.127 0.873 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.344 0.656 28 H 0.075 0.925 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -0.510 -0.858 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.166 4.166 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.068 3.932 10 C -0.268 4.268 11 C -0.097 4.097 12 C -0.232 4.232 13 C -0.051 4.051 14 C -0.248 4.248 15 C -0.150 4.150 16 C -0.066 4.066 17 N -0.305 5.305 18 C -0.011 4.011 19 H 0.104 0.896 20 H 0.114 0.886 21 H 0.145 0.855 22 H 0.112 0.888 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.161 0.839 28 H 0.093 0.907 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.282 -0.651 -1.334 13.365 hybrid contribution -1.743 0.704 0.688 2.001 sum 11.539 0.053 -0.646 11.558 Atomic orbital electron populations 1.69729 1.09150 1.31447 1.37493 1.26813 0.95331 1.04186 0.90314 0.85448 0.79379 0.76487 0.79483 1.18237 1.20182 1.18107 1.19459 0.94683 0.95584 1.42337 0.92960 1.17847 0.92599 0.92338 0.90391 1.21122 0.97011 1.04510 1.04149 1.20940 0.92661 0.97750 0.98394 1.20312 0.98580 1.00173 1.04177 1.19629 0.93532 0.96061 0.95905 1.21118 0.93794 1.04394 1.05486 1.21264 0.96966 0.97174 0.99639 1.22132 0.93324 0.91563 0.99618 1.61104 1.48241 1.04245 1.16912 1.20665 0.85549 0.98785 0.96129 0.89576 0.88633 0.85528 0.88769 0.90201 0.90654 0.91293 0.88064 0.83879 0.90669 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.92 13.93 21.83 0.30 -47.62 15 2 C 0.05 2.63 5.41 85.26 0.46 3.09 15 3 Si 0.97 43.98 24.52 68.60 1.68 45.67 15 4 H -0.26 -10.98 6.71 99.48 0.67 -10.32 15 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 15 6 H -0.26 -11.99 6.86 99.48 0.68 -11.31 15 7 C -0.49 -28.62 9.58 23.46 0.22 -28.39 15 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 15 9 C 0.07 3.74 5.10 -21.34 -0.11 3.63 15 10 C -0.25 -12.05 7.19 22.67 0.16 -11.89 15 11 C -0.08 -3.23 9.61 22.29 0.21 -3.02 15 12 C -0.23 -8.66 5.82 -19.61 -0.11 -8.78 15 13 C -0.05 -2.03 5.77 -19.86 -0.11 -2.14 15 14 C -0.23 -10.90 9.39 22.78 0.21 -10.69 15 15 C -0.11 -3.32 5.81 29.94 0.17 -3.15 15 16 C 0.06 1.54 6.64 86.32 0.57 2.12 15 17 N -0.68 -17.24 6.96 -517.61 -3.60 -20.84 15 18 C 0.12 3.40 6.33 85.62 0.54 3.94 15 19 H 0.29 14.79 8.30 -92.71 -0.77 14.02 15 20 H 0.10 4.63 4.73 -2.91 -0.01 4.62 15 21 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 22 H 0.09 4.42 8.06 -2.91 -0.02 4.40 15 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.07 1.75 8.05 -2.39 -0.02 1.73 15 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 27 H 0.34 8.25 8.73 -89.69 -0.78 7.47 15 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 29 H 0.08 2.17 8.13 -2.38 -0.02 2.16 15 Total: -1.00 -61.32 237.38 0.92 -60.40 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.30 Total: 17.66 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 2.23 Total: -55.27 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -3.30 Total: -68.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.68 Total: 45.67 kcal Total: -61.32 0.92 -60.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.134 kcal (2) G-P(sol) polarization free energy of solvation -61.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds