Wall clock time and date at job start Mon Mar 30 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00378 * 2 1 4 4 H 1.48498 * 109.47118 * 240.00175 * 3 2 1 5 5 H 1.48502 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47159 * 119.99831 * 3 2 1 7 7 C 1.37876 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00360 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47415 * 180.02562 * 9 7 2 11 11 C 1.38264 * 120.00133 * 90.00387 * 10 9 7 12 12 C 1.38211 * 120.00688 * 180.02562 * 11 10 9 13 13 C 1.38185 * 120.03175 * 359.97438 * 12 11 10 14 14 C 1.38452 * 119.96337 * 359.97031 * 13 12 11 15 15 C 1.38180 * 119.96898 * 0.03462 * 14 13 12 16 16 C 1.51183 * 108.25100 * 179.97438 * 14 13 12 17 17 N 1.48058 * 105.67526 * 17.50016 * 16 14 13 18 18 C 1.48216 * 103.80383 * 332.19989 * 17 16 14 19 19 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47032 * 60.00218 * 9 7 2 21 21 H 1.09003 * 109.46855 * 300.00750 * 9 7 2 22 22 H 1.08001 * 119.99261 * 0.02562 * 11 10 9 23 23 H 1.07998 * 119.98724 * 179.97438 * 12 11 10 24 24 H 1.07994 * 119.98705 * 179.97438 * 15 14 13 25 25 H 1.09002 * 110.20057 * 136.54794 * 16 14 13 26 26 H 1.08997 * 110.20898 * 258.36849 * 16 14 13 27 27 H 1.00900 * 110.99619 * 213.03622 * 17 16 14 28 28 H 1.09000 * 110.31672 * 268.86102 * 18 17 16 29 29 H 1.09005 * 110.17974 * 146.91016 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 6 2.6793 -4.1702 1.1969 12 6 3.5778 -5.2204 1.1970 13 6 4.0273 -5.7461 0.0007 14 6 3.5766 -5.2206 -1.1983 15 6 2.6784 -4.1706 -1.1976 16 6 4.2316 -5.9852 -2.3262 17 7 4.7395 -7.2365 -1.7193 18 6 4.9947 -6.8663 -0.3070 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6245 -2.5570 0.8897 22 1 2.3280 -3.7600 2.1321 23 1 3.9287 -5.6304 2.1325 24 1 2.3271 -3.7602 -2.1327 25 1 3.4998 -6.2127 -3.1014 26 1 5.0553 -5.4068 -2.7447 27 1 5.5897 -7.5383 -2.1712 28 1 6.0214 -6.5210 -0.1859 29 1 4.8039 -7.7184 0.3455 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:59 Heat of formation + Delta-G solvation = 22.318913 kcal Electronic energy + Delta-G solvation = -12299.700614 eV Core-core repulsion = 10187.027334 eV Total energy + Delta-G solvation = -2112.673280 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.75654 -36.29148 -33.15027 -31.17772 -30.29291 -27.83385 -26.40340 -23.59346 -22.22230 -20.91202 -19.55890 -16.51430 -16.28428 -15.19390 -14.96781 -14.75950 -14.06051 -13.38324 -13.29621 -12.67407 -12.48539 -12.00193 -11.89559 -11.52920 -11.28327 -11.04573 -10.69325 -10.56178 -10.17005 -9.61735 -9.47786 -8.82888 -8.43966 -8.15528 -7.61663 -6.05863 -4.10080 1.95068 2.02577 3.30621 3.34788 3.37889 4.31026 4.32706 4.48798 4.82906 4.85449 5.28735 5.45141 5.48609 5.54882 5.70270 5.81179 5.97259 6.19471 6.28784 6.48572 6.58234 6.67519 7.07816 7.14663 7.15242 7.25667 7.48074 7.69009 7.82329 7.89652 8.29662 8.94743 9.53725 11.03948 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055145 B = 0.007484 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.628140 B = 3740.583605 C = 3831.641074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.028 4.028 11 C -0.122 4.122 12 C -0.101 4.101 13 C -0.141 4.141 14 C -0.110 4.110 15 C -0.103 4.103 16 C 0.082 3.918 17 N -0.661 5.661 18 C 0.087 3.913 19 H 0.263 0.737 20 H 0.029 0.971 21 H 0.030 0.970 22 H 0.122 0.878 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.339 0.661 28 H 0.050 0.950 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 -10.283 -1.331 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.029 4.029 11 C -0.140 4.140 12 C -0.119 4.119 13 C -0.142 4.142 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.046 4.046 17 N -0.288 5.288 18 C -0.042 4.042 19 H 0.073 0.927 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.140 0.860 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.068 0.932 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.471 -10.541 -1.256 12.981 hybrid contribution 1.291 1.586 -0.030 2.046 sum 8.762 -8.955 -1.287 12.594 Atomic orbital electron populations 1.69948 1.06029 1.26968 1.50317 1.25007 0.94888 0.99240 0.95134 0.86588 0.79534 0.82788 0.78725 1.20174 1.21193 1.20165 1.21011 0.92986 0.89866 1.51269 0.92566 1.18356 0.92521 0.89481 0.98496 1.20640 0.95855 0.94794 0.91565 1.21028 0.98156 0.96298 0.98527 1.20342 0.98305 0.97294 0.95984 1.20250 1.00716 0.99094 0.94092 1.20402 0.98659 0.97250 0.94714 1.20411 0.97491 0.95577 0.98667 1.21337 0.98512 0.88983 0.95815 1.63602 1.33324 1.29184 1.02721 1.21304 0.96147 0.96052 0.90722 0.92744 0.95228 0.95171 0.86006 0.87031 0.86400 0.89606 0.92911 0.84639 0.93234 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.25 5.10 -29.04 -0.15 1.10 15 10 C -0.03 -0.63 5.07 -104.62 -0.53 -1.16 15 11 C -0.12 -2.43 9.70 -39.58 -0.38 -2.82 15 12 C -0.10 -1.75 10.04 -39.61 -0.40 -2.15 15 13 C -0.14 -2.40 6.26 -104.33 -0.65 -3.05 15 14 C -0.11 -1.96 6.26 -104.33 -0.65 -2.62 15 15 C -0.10 -2.09 9.70 -39.61 -0.38 -2.47 15 16 C 0.08 1.17 7.45 -4.10 -0.03 1.14 15 17 N -0.66 -8.54 7.73 -113.90 -0.88 -9.42 15 18 C 0.09 1.16 7.46 -4.02 -0.03 1.13 15 19 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 20 H 0.03 0.80 8.09 -51.93 -0.42 0.38 15 21 H 0.03 0.81 8.09 -51.93 -0.42 0.39 15 22 H 0.12 2.32 8.06 -52.49 -0.42 1.90 15 23 H 0.11 1.60 8.06 -52.49 -0.42 1.18 15 24 H 0.12 2.32 8.06 -52.49 -0.42 1.89 15 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.34 3.35 8.91 -39.29 -0.35 3.00 15 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -30.15 251.35 -8.69 -38.84 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.69 Total: 0.01 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -3.62 Total: -24.06 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.14 Total: -35.09 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.15 -8.69 -38.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.158 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds