Wall clock time and date at job start Mon Mar 30 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00378 * 2 1 4 4 H 1.48498 * 109.47118 * 240.00175 * 3 2 1 5 5 H 1.48502 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47159 * 119.99831 * 3 2 1 7 7 C 1.37876 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00360 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47415 * 180.02562 * 9 7 2 11 11 C 1.38264 * 120.00133 * 90.00387 * 10 9 7 12 12 C 1.38211 * 120.00688 * 180.02562 * 11 10 9 13 13 C 1.38185 * 120.03175 * 359.97438 * 12 11 10 14 14 C 1.38452 * 119.96337 * 359.97031 * 13 12 11 15 15 C 1.38180 * 119.96898 * 0.03462 * 14 13 12 16 16 C 1.51183 * 108.25100 * 179.97438 * 14 13 12 17 17 N 1.48058 * 105.67526 * 17.50016 * 16 14 13 18 18 C 1.48216 * 103.80383 * 332.19989 * 17 16 14 19 19 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47032 * 60.00218 * 9 7 2 21 21 H 1.09003 * 109.46855 * 300.00750 * 9 7 2 22 22 H 1.08001 * 119.99261 * 0.02562 * 11 10 9 23 23 H 1.07998 * 119.98724 * 179.97438 * 12 11 10 24 24 H 1.07994 * 119.98705 * 179.97438 * 15 14 13 25 25 H 1.09002 * 110.20057 * 136.54794 * 16 14 13 26 26 H 1.08997 * 110.20898 * 258.36849 * 16 14 13 27 27 H 1.00900 * 110.99619 * 213.03622 * 17 16 14 28 28 H 1.09000 * 110.31672 * 268.86102 * 18 17 16 29 29 H 1.09005 * 110.17974 * 146.91016 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 6 2.6793 -4.1702 1.1969 12 6 3.5778 -5.2204 1.1970 13 6 4.0273 -5.7461 0.0007 14 6 3.5766 -5.2206 -1.1983 15 6 2.6784 -4.1706 -1.1976 16 6 4.2316 -5.9852 -2.3262 17 7 4.7395 -7.2365 -1.7193 18 6 4.9947 -6.8663 -0.3070 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6245 -2.5570 0.8897 22 1 2.3280 -3.7600 2.1321 23 1 3.9287 -5.6304 2.1325 24 1 2.3271 -3.7602 -2.1327 25 1 3.4998 -6.2127 -3.1014 26 1 5.0553 -5.4068 -2.7447 27 1 5.5897 -7.5383 -2.1712 28 1 6.0214 -6.5210 -0.1859 29 1 4.8039 -7.7184 0.3455 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:59 Heat of formation + Delta-G solvation = 2.677857 kcal Electronic energy + Delta-G solvation = -12300.552314 eV Core-core repulsion = 10187.027334 eV Total energy + Delta-G solvation = -2113.524980 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09774 -37.68035 -35.16538 -32.79348 -31.77725 -29.33917 -27.95222 -25.36193 -23.77410 -22.17369 -21.12058 -18.53627 -17.64758 -16.72720 -16.39464 -16.29669 -15.64345 -14.75717 -14.50584 -14.47591 -13.95718 -13.63488 -13.27356 -13.10539 -12.97776 -12.68055 -12.56536 -12.34014 -11.72135 -11.57574 -11.40554 -10.62683 -10.00391 -9.61762 -9.03241 -8.22145 -6.36505 0.47502 0.53842 1.38320 1.41169 1.49635 2.37749 2.89058 3.08024 3.32665 3.53717 3.66553 4.14958 4.30373 4.45249 4.50680 4.56236 4.66181 4.75284 4.89957 5.03785 5.16459 5.31481 5.37675 5.39406 5.54731 5.71083 5.76258 6.02209 6.08047 6.22055 6.40823 6.75417 7.32163 8.86865 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055145 B = 0.007484 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.628140 B = 3740.583605 C = 3831.641074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.058 3.942 10 C -0.062 4.062 11 C -0.136 4.136 12 C -0.095 4.095 13 C -0.140 4.140 14 C -0.117 4.117 15 C -0.119 4.119 16 C 0.085 3.915 17 N -0.662 5.662 18 C 0.090 3.910 19 H 0.266 0.734 20 H 0.002 0.998 21 H 0.005 0.995 22 H 0.120 0.880 23 H 0.148 0.852 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.359 0.641 28 H 0.074 0.926 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -11.395 -1.347 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.062 4.062 11 C -0.154 4.154 12 C -0.113 4.113 13 C -0.140 4.140 14 C -0.118 4.118 15 C -0.138 4.138 16 C -0.043 4.043 17 N -0.292 5.292 18 C -0.039 4.039 19 H 0.075 0.925 20 H 0.020 0.980 21 H 0.023 0.977 22 H 0.138 0.862 23 H 0.166 0.834 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.177 0.823 28 H 0.092 0.908 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.036 -11.674 -1.279 15.448 hybrid contribution 0.514 1.826 -0.032 1.897 sum 10.550 -9.848 -1.311 14.492 Atomic orbital electron populations 1.70075 1.07707 1.28118 1.51045 1.25944 0.95789 1.03159 0.94431 0.85467 0.78290 0.77930 0.79181 1.19274 1.20421 1.19192 1.21320 0.93003 0.91204 1.51372 0.92857 1.18085 0.92831 0.91121 0.95866 1.20354 0.97082 0.95161 0.93616 1.21089 0.99244 0.97516 0.97513 1.20640 0.96839 0.95888 0.97958 1.20850 1.00312 0.99418 0.93428 1.20792 0.97584 0.96282 0.97139 1.20375 0.98822 0.96976 0.97629 1.21362 0.99022 0.89320 0.94636 1.63584 1.34880 1.28157 1.02613 1.21402 0.96103 0.95185 0.91162 0.92467 0.97957 0.97667 0.86206 0.83441 0.87178 0.89045 0.91117 0.82311 0.90837 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 15 2 C 0.01 0.29 5.46 84.65 0.46 0.76 15 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.53 -30.95 9.09 25.60 0.23 -30.72 15 8 H 0.05 3.06 7.74 -2.91 -0.02 3.03 15 9 C 0.06 3.20 5.10 29.10 0.15 3.35 15 10 C -0.06 -2.87 5.07 -19.86 -0.10 -2.97 15 11 C -0.14 -5.46 9.70 22.27 0.22 -5.25 15 12 C -0.10 -3.10 10.04 22.25 0.22 -2.88 15 13 C -0.14 -4.36 6.26 -19.67 -0.12 -4.48 15 14 C -0.12 -4.03 6.26 -19.67 -0.12 -4.15 15 15 C -0.12 -4.97 9.70 22.25 0.22 -4.75 15 16 C 0.09 2.18 7.45 85.49 0.64 2.82 15 17 N -0.66 -14.40 7.73 -514.27 -3.98 -18.38 15 18 C 0.09 2.00 7.46 85.45 0.64 2.64 15 19 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 20 H 0.00 0.13 8.09 -2.39 -0.02 0.11 15 21 H 0.01 0.29 8.09 -2.39 -0.02 0.27 15 22 H 0.12 4.72 8.06 -2.91 -0.02 4.69 15 23 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 24 H 0.11 4.57 8.06 -2.91 -0.02 4.54 15 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 27 H 0.36 5.44 8.91 -89.69 -0.80 4.64 15 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 15 29 H 0.10 1.95 8.14 -2.38 -0.02 1.94 15 Total: -1.00 -66.48 251.35 1.10 -65.38 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.34 Total: 8.40 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 2.43 Total: -45.64 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -3.69 Total: -74.73 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.48 1.10 -65.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.059 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds