Wall clock time and date at job start Mon Mar 30 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99910 * 3 2 1 5 5 H 1.48500 * 109.47472 * 29.99783 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00157 * 3 2 1 7 7 C 1.37876 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00098 * 185.18724 * 7 2 1 9 9 C 1.50701 * 120.00041 * 5.18890 * 7 2 1 10 10 H 1.08997 * 110.26763 * 26.94480 * 9 7 2 11 11 C 1.54340 * 110.30166 * 264.87155 * 9 7 2 12 12 C 1.54352 * 102.37990 * 214.73981 * 11 9 7 13 13 C 1.51361 * 105.15849 * 26.33131 * 12 11 9 14 14 C 1.38122 * 109.78917 * 342.82104 * 13 12 11 15 15 C 1.38522 * 119.89070 * 180.02562 * 14 13 12 16 16 C 1.38195 * 120.37646 * 0.02562 * 15 14 13 17 17 C 1.38077 * 120.01358 * 359.61606 * 16 15 14 18 18 C 1.38822 * 119.84969 * 0.68855 * 17 16 15 19 19 N 1.39678 * 119.96896 * 179.64523 * 18 17 16 20 20 H 0.96995 * 119.99925 * 0.02562 * 1 2 3 21 21 H 1.09006 * 110.82641 * 96.51660 * 11 9 7 22 22 H 1.09005 * 110.82981 * 332.96583 * 11 9 7 23 23 H 1.08999 * 110.30744 * 267.41062 * 12 11 9 24 24 H 1.09005 * 110.38570 * 145.29138 * 12 11 9 25 25 H 1.08001 * 119.81443 * 180.02562 * 15 14 13 26 26 H 1.07998 * 119.98864 * 179.97438 * 16 15 14 27 27 H 1.08000 * 120.07665 * 180.32765 * 17 16 15 28 28 H 0.97007 * 119.99893 * 179.72065 * 19 18 17 29 29 H 0.97000 * 119.99942 * 359.44975 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1959 0.0851 9 6 1.2558 -2.4965 -0.1169 10 1 0.3167 -2.3455 -0.6492 11 6 0.9886 -3.0888 1.2831 12 6 1.0999 -4.6068 1.0270 13 6 2.0153 -4.7400 -0.1711 14 6 2.1051 -3.5284 -0.8280 15 6 2.8933 -3.4143 -1.9614 16 6 3.5912 -4.5069 -2.4400 17 6 3.5115 -5.7190 -1.7836 18 6 2.7180 -5.8406 -0.6510 19 7 2.6298 -7.0675 0.0107 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0108 -2.8266 1.6305 22 1 1.7461 -2.7592 1.9944 23 1 0.1190 -5.0253 0.8019 24 1 1.5344 -5.1071 1.8925 25 1 2.9629 -2.4662 -2.4739 26 1 4.2036 -4.4110 -3.3244 27 1 4.0607 -6.5721 -2.1538 28 1 2.0786 -7.1519 0.8045 29 1 3.1165 -7.8361 -0.3258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261295845.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:18 Heat of formation + Delta-G solvation = 10.284833 kcal Electronic energy + Delta-G solvation = -12681.206982 eV Core-core repulsion = 10568.011865 eV Total energy + Delta-G solvation = -2113.195117 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.27292 -35.38738 -33.64637 -32.35152 -28.66518 -27.96980 -26.60388 -23.74027 -21.40196 -20.19786 -19.33587 -16.64622 -16.15147 -15.80821 -14.62485 -14.42585 -13.92336 -13.66178 -12.86910 -12.33034 -12.24886 -11.91388 -11.41933 -10.93645 -10.62362 -10.50955 -10.41871 -10.17246 -10.10738 -9.83915 -9.17456 -9.10267 -8.41334 -7.56485 -6.84827 -6.01038 -4.03097 2.23248 2.44425 3.32691 3.39354 3.43320 4.34587 4.45319 4.69740 5.27732 5.40404 5.63249 5.84872 6.06168 6.14578 6.25136 6.34902 6.44957 6.69734 6.84369 7.00365 7.05997 7.19521 7.30778 7.45611 7.66299 7.77689 7.84517 7.95041 8.09511 8.20056 8.44825 9.03689 9.60116 11.08236 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.046293 B = 0.010200 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.692509 B = 2744.499519 C = 3161.155368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.066 3.934 10 H 0.071 0.929 11 C -0.105 4.105 12 C -0.070 4.070 13 C -0.191 4.191 14 C -0.003 4.003 15 C -0.159 4.159 16 C -0.085 4.085 17 C -0.224 4.224 18 C 0.216 3.784 19 N -0.887 5.887 20 H 0.261 0.739 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.393 0.607 29 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -9.893 -0.676 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.048 3.952 10 H 0.089 0.911 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.195 4.195 14 C -0.004 4.004 15 C -0.178 4.178 16 C -0.104 4.104 17 C -0.246 4.246 18 C 0.114 3.886 19 N -0.427 5.427 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.220 0.780 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.477 -9.699 -0.697 10.327 hybrid contribution 0.503 0.525 0.115 0.736 sum 3.979 -9.174 -0.582 10.017 Atomic orbital electron populations 1.69939 1.05968 1.26692 1.50583 1.24997 0.94833 0.99161 0.94810 0.86610 0.79933 0.83417 0.78169 1.20590 1.21329 1.19845 1.21025 0.93263 0.89875 1.50033 0.92503 1.18547 0.95228 0.91018 0.90435 0.91101 1.22420 1.00584 0.90888 1.00390 1.20909 0.96516 0.99308 0.93954 1.20218 1.04209 0.93441 1.01674 1.21258 0.92570 0.94653 0.91929 1.20504 1.00506 0.98385 0.98453 1.20679 0.98574 0.92547 0.98573 1.20197 1.06811 0.98595 0.99032 1.17370 0.94319 0.85087 0.91814 1.42359 1.57220 1.09625 1.33518 0.92906 0.92288 0.92349 0.92367 0.93351 0.86638 0.87177 0.87483 0.78003 0.78442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 12.90 55.43 0.71 -25.09 15 2 C 0.06 1.77 5.45 -17.82 -0.10 1.67 15 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.50 -13.92 8.07 -34.44 -0.28 -14.19 15 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 15 9 C 0.07 1.68 2.87 -91.89 -0.26 1.42 15 10 H 0.07 1.99 7.49 -51.93 -0.39 1.60 15 11 C -0.10 -2.38 6.58 -25.32 -0.17 -2.54 15 12 C -0.07 -1.34 6.27 -26.85 -0.17 -1.50 15 13 C -0.19 -3.91 6.10 -104.01 -0.63 -4.55 15 14 C 0.00 -0.07 5.59 -104.23 -0.58 -0.66 15 15 C -0.16 -3.39 9.77 -39.49 -0.39 -3.77 15 16 C -0.09 -1.54 10.04 -39.66 -0.40 -1.94 15 17 C -0.22 -3.84 9.89 -39.42 -0.39 -4.23 15 18 C 0.22 3.86 6.75 -83.74 -0.57 3.29 15 19 N -0.89 -12.02 9.09 32.44 0.29 -11.72 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 22 H 0.06 1.35 7.91 -51.93 -0.41 0.94 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.05 0.82 8.10 -51.93 -0.42 0.40 15 25 H 0.12 2.48 8.06 -52.49 -0.42 2.06 15 26 H 0.11 1.67 8.06 -52.49 -0.42 1.24 15 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.39 4.84 8.36 -40.82 -0.34 4.50 15 29 H 0.39 4.21 8.84 -40.82 -0.36 3.85 15 LS Contribution 247.51 15.07 3.73 3.73 Total: -1.00 -29.49 247.51 -7.79 -37.28 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.58 Total: 6.46 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -3.93 Total: -27.01 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 1.01 Total: -36.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.49 -7.79 -37.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295845.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.565 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds