Wall clock time and date at job start Mon Mar 30 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99910 * 3 2 1 5 5 H 1.48500 * 109.47472 * 29.99783 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00157 * 3 2 1 7 7 C 1.37876 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00098 * 185.18724 * 7 2 1 9 9 C 1.50701 * 120.00041 * 5.18890 * 7 2 1 10 10 H 1.08997 * 110.26763 * 26.94480 * 9 7 2 11 11 C 1.54340 * 110.30166 * 264.87155 * 9 7 2 12 12 C 1.54352 * 102.37990 * 214.73981 * 11 9 7 13 13 C 1.51361 * 105.15849 * 26.33131 * 12 11 9 14 14 C 1.38122 * 109.78917 * 342.82104 * 13 12 11 15 15 C 1.38522 * 119.89070 * 180.02562 * 14 13 12 16 16 C 1.38195 * 120.37646 * 0.02562 * 15 14 13 17 17 C 1.38077 * 120.01358 * 359.61606 * 16 15 14 18 18 C 1.38822 * 119.84969 * 0.68855 * 17 16 15 19 19 N 1.39678 * 119.96896 * 179.64523 * 18 17 16 20 20 H 0.96995 * 119.99925 * 0.02562 * 1 2 3 21 21 H 1.09006 * 110.82641 * 96.51660 * 11 9 7 22 22 H 1.09005 * 110.82981 * 332.96583 * 11 9 7 23 23 H 1.08999 * 110.30744 * 267.41062 * 12 11 9 24 24 H 1.09005 * 110.38570 * 145.29138 * 12 11 9 25 25 H 1.08001 * 119.81443 * 180.02562 * 15 14 13 26 26 H 1.07998 * 119.98864 * 179.97438 * 16 15 14 27 27 H 1.08000 * 120.07665 * 180.32765 * 17 16 15 28 28 H 0.97007 * 119.99893 * 179.72065 * 19 18 17 29 29 H 0.97000 * 119.99942 * 359.44975 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1959 0.0851 9 6 1.2558 -2.4965 -0.1169 10 1 0.3167 -2.3455 -0.6492 11 6 0.9886 -3.0888 1.2831 12 6 1.0999 -4.6068 1.0270 13 6 2.0153 -4.7400 -0.1711 14 6 2.1051 -3.5284 -0.8280 15 6 2.8933 -3.4143 -1.9614 16 6 3.5912 -4.5069 -2.4400 17 6 3.5115 -5.7190 -1.7836 18 6 2.7180 -5.8406 -0.6510 19 7 2.6298 -7.0675 0.0107 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0108 -2.8266 1.6305 22 1 1.7461 -2.7592 1.9944 23 1 0.1190 -5.0253 0.8019 24 1 1.5344 -5.1071 1.8925 25 1 2.9629 -2.4662 -2.4739 26 1 4.2036 -4.4110 -3.3244 27 1 4.0607 -6.5721 -2.1538 28 1 2.0786 -7.1519 0.8045 29 1 3.1165 -7.8361 -0.3258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261295845.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:18 Heat of formation + Delta-G solvation = -7.788141 kcal Electronic energy + Delta-G solvation = -12681.990685 eV Core-core repulsion = 10568.011865 eV Total energy + Delta-G solvation = -2113.978820 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.81561 -37.00723 -35.02061 -34.38937 -30.30498 -29.61221 -28.21062 -25.69421 -22.96724 -21.70020 -21.07313 -18.54662 -17.67884 -17.24716 -16.36106 -16.09978 -15.60770 -15.17289 -14.40452 -14.03615 -13.86532 -13.61762 -13.20888 -12.85693 -12.35894 -12.30413 -12.23810 -11.76954 -11.73438 -11.41686 -11.06777 -10.99531 -10.51447 -9.18182 -8.19783 -8.12558 -6.22417 0.73361 0.92871 1.40495 1.41116 1.51938 2.43137 3.13819 3.16273 3.21094 3.89515 4.12802 4.35371 4.50161 4.58094 4.77094 4.81845 4.89018 5.14253 5.20224 5.32993 5.46626 5.52484 5.60883 5.67914 5.81557 5.90504 6.14060 6.26640 6.39022 6.76368 6.89828 7.18138 7.43345 8.95368 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.046293 B = 0.010200 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.692509 B = 2744.499519 C = 3161.155368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.046 0.954 9 C 0.060 3.940 10 H 0.029 0.971 11 C -0.103 4.103 12 C -0.057 4.057 13 C -0.206 4.206 14 C -0.041 4.041 15 C -0.189 4.189 16 C -0.077 4.077 17 C -0.217 4.217 18 C 0.223 3.777 19 N -0.868 5.868 20 H 0.263 0.737 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.401 0.599 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 -12.027 -0.788 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.065 0.935 9 C 0.042 3.958 10 H 0.047 0.953 11 C -0.141 4.141 12 C -0.094 4.094 13 C -0.210 4.210 14 C -0.042 4.042 15 C -0.209 4.209 16 C -0.095 4.095 17 C -0.239 4.239 18 C 0.119 3.881 19 N -0.409 5.409 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.160 0.840 27 H 0.165 0.835 28 H 0.230 0.770 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.072 -11.881 -0.796 12.942 hybrid contribution 0.044 1.070 0.116 1.077 sum 5.116 -10.811 -0.680 11.979 Atomic orbital electron populations 1.70061 1.07349 1.27471 1.51782 1.25766 0.95651 1.02507 0.94635 0.85604 0.78735 0.79278 0.78368 1.19978 1.20685 1.19304 1.21275 0.92889 0.91512 1.49729 0.93540 1.18434 0.93838 0.91647 0.91923 0.95316 1.22245 0.99400 0.93978 0.98447 1.20781 0.97377 0.96409 0.94833 1.20301 1.05255 0.93575 1.01918 1.21104 0.94265 0.95196 0.93653 1.20551 1.02348 0.99186 0.98818 1.20992 0.97503 0.91769 0.99239 1.20656 1.05913 0.99285 0.98086 1.17438 0.93118 0.85689 0.91893 1.42279 1.56790 1.08625 1.33181 0.92847 0.93454 0.93372 0.91182 0.90494 0.88520 0.83968 0.83472 0.76985 0.76335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 12.90 21.45 0.28 -55.47 15 2 C 0.01 0.72 5.45 84.65 0.46 1.19 15 3 Si 0.95 44.98 29.54 68.60 2.03 47.00 15 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 7 C -0.52 -29.78 8.07 25.60 0.21 -29.57 15 8 H 0.05 2.70 7.82 -2.91 -0.02 2.68 15 9 C 0.06 3.21 2.87 -11.61 -0.03 3.18 15 10 H 0.03 1.74 7.49 -2.39 -0.02 1.72 15 11 C -0.10 -4.80 6.58 31.51 0.21 -4.60 15 12 C -0.06 -2.13 6.27 30.52 0.19 -1.94 15 13 C -0.21 -8.18 6.10 -19.47 -0.12 -8.30 15 14 C -0.04 -1.94 5.59 -19.61 -0.11 -2.05 15 15 C -0.19 -8.17 9.77 22.33 0.22 -7.96 15 16 C -0.08 -2.59 10.04 22.22 0.22 -2.37 15 17 C -0.22 -6.55 9.89 22.37 0.22 -6.33 15 18 C 0.22 7.20 6.75 38.24 0.26 7.46 15 19 N -0.87 -19.53 9.09 -51.30 -0.47 -19.99 15 20 H 0.26 14.91 8.31 -92.71 -0.77 14.14 15 21 H 0.05 2.25 8.14 -2.38 -0.02 2.23 15 22 H 0.05 2.29 7.91 -2.38 -0.02 2.27 15 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.08 2.41 8.10 -2.38 -0.02 2.39 15 25 H 0.10 4.37 8.06 -2.91 -0.02 4.35 15 26 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 27 H 0.15 3.29 8.06 -2.91 -0.02 3.26 15 28 H 0.40 8.10 8.36 -92.70 -0.77 7.32 15 29 H 0.41 6.64 8.84 -92.71 -0.82 5.82 15 Total: -1.00 -66.13 247.51 3.13 -63.00 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.43 Total: 16.74 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 1.73 Total: -51.28 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -0.19 Total: -75.47 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -66.13 3.13 -63.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295845.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.212 kcal (2) G-P(sol) polarization free energy of solvation -66.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds