Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47157 * 265.19903 * 3 2 1 5 5 H 1.48506 * 109.46992 * 25.19517 * 3 2 1 6 6 H 1.48493 * 109.47438 * 145.19426 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99976 * 0.38413 * 7 2 1 9 9 C 1.50702 * 120.00188 * 180.37644 * 7 2 1 10 10 H 1.09003 * 110.34768 * 337.24555 * 9 7 2 11 11 C 1.54350 * 110.30368 * 99.37610 * 9 7 2 12 12 C 1.54350 * 102.36952 * 145.24596 * 11 9 7 13 13 C 1.51390 * 105.17025 * 333.67483 * 12 11 9 14 14 C 1.38566 * 130.34635 * 197.13716 * 13 12 11 15 15 C 1.38144 * 120.37722 * 180.02562 * 14 13 12 16 16 C 1.38128 * 120.01559 * 0.04481 * 15 14 13 17 17 C 1.38780 * 119.84988 * 359.97438 * 16 15 14 18 18 N 1.39672 * 119.97007 * 180.02562 * 17 16 15 19 19 C 1.38084 * 109.76081 * 17.18134 * 13 12 11 20 20 H 0.96996 * 119.99608 * 0.02562 * 1 2 3 21 21 H 1.08998 * 110.82973 * 263.47059 * 11 9 7 22 22 H 1.09001 * 110.82634 * 27.03125 * 11 9 7 23 23 H 1.08997 * 110.30306 * 214.75127 * 12 11 9 24 24 H 1.09003 * 110.29912 * 92.59269 * 12 11 9 25 25 H 1.08007 * 119.80952 * 0.02979 * 14 13 12 26 26 H 1.08004 * 119.99430 * 180.02562 * 15 14 13 27 27 H 1.07994 * 120.07340 * 179.97438 * 16 15 14 28 28 H 0.96995 * 120.00413 * 179.97438 * 18 17 16 29 29 H 0.97004 * 120.00092 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5982 1.9878 -1.3952 5 1 1.3996 2.6799 0.5960 6 1 3.4923 1.4716 0.7991 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 -0.0053 9 6 3.5116 -1.1941 0.0091 10 1 3.8928 -0.2505 -0.3813 11 6 4.0390 -1.4340 1.4397 12 6 5.3169 -2.2618 1.1865 13 6 5.0779 -2.9661 -0.1321 14 6 5.7192 -4.0578 -0.6952 15 6 5.3274 -4.5378 -1.9299 16 6 4.2916 -3.9286 -2.6111 17 6 3.6461 -2.8347 -2.0520 18 7 2.5981 -2.2171 -2.7385 19 6 4.0414 -2.3529 -0.8078 20 1 -0.4849 0.8400 -0.0004 21 1 4.2794 -0.4894 1.9277 22 1 3.3190 -2.0030 2.0279 23 1 5.4596 -2.9907 1.9842 24 1 6.1842 -1.6056 1.1129 25 1 6.5299 -4.5362 -0.1656 26 1 5.8313 -5.3894 -2.3628 27 1 3.9849 -4.3028 -3.5766 28 1 2.1464 -1.4528 -2.3480 29 1 2.3220 -2.5527 -3.6057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261299792.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = 11.031398 kcal Electronic energy + Delta-G solvation = -12926.387290 eV Core-core repulsion = 10813.224546 eV Total energy + Delta-G solvation = -2113.162743 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.34115 -35.29315 -33.82247 -32.19493 -28.88389 -28.00326 -27.06750 -23.38039 -21.44976 -20.25213 -19.24633 -17.08179 -16.03645 -15.61885 -14.79719 -14.37960 -13.82976 -13.47734 -12.93856 -12.61153 -12.21017 -12.14459 -11.69816 -11.09049 -10.84446 -10.62230 -10.39050 -10.20557 -9.93583 -9.69811 -9.50680 -9.28309 -8.62457 -7.68212 -6.57972 -6.14863 -4.13598 2.18895 2.42224 3.22648 3.32656 3.35117 4.34783 4.63128 4.84649 5.13238 5.34709 5.58908 5.72641 5.96125 5.99702 6.03666 6.25417 6.37558 6.57085 6.66813 6.79385 6.89657 7.04966 7.19032 7.21553 7.34034 7.49042 7.72780 7.74204 8.42021 8.50709 8.78934 8.93936 9.46999 10.97246 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.038091 B = 0.013318 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.906424 B = 2101.873844 C = 2544.277649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.052 3.948 10 H 0.041 0.959 11 C -0.117 4.117 12 C -0.082 4.082 13 C -0.068 4.068 14 C -0.181 4.181 15 C -0.089 4.089 16 C -0.221 4.221 17 C 0.243 3.757 18 N -0.869 5.869 19 C -0.131 4.131 20 H 0.264 0.736 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.415 0.585 29 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 -3.720 -2.543 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.094 0.906 9 C 0.033 3.967 10 H 0.059 0.941 11 C -0.155 4.155 12 C -0.119 4.119 13 C -0.069 4.069 14 C -0.201 4.201 15 C -0.108 4.108 16 C -0.244 4.244 17 C 0.136 3.864 18 N -0.408 5.408 19 C -0.136 4.136 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.250 0.750 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.475 -3.573 -2.514 9.535 hybrid contribution 0.054 0.963 -0.241 0.994 sum 8.529 -2.610 -2.755 9.336 Atomic orbital electron populations 1.69906 1.06186 1.26998 1.50363 1.25105 0.94709 0.98791 0.94582 0.86915 0.80329 0.83862 0.78843 1.20233 1.21531 1.18917 1.20972 0.88338 0.94395 1.50387 0.90595 1.18652 0.96563 0.91593 0.89879 0.94143 1.22587 0.94815 0.98284 0.99779 1.21094 0.99199 0.97905 0.93735 1.20438 0.95261 0.94835 0.96318 1.20177 1.03228 0.99507 0.97194 1.20486 0.96766 0.98836 0.94695 1.20352 1.02266 1.00100 1.01720 1.17450 0.87623 0.90911 0.90430 1.42873 1.37742 1.38018 1.22208 1.20546 0.97994 1.01088 0.93965 0.92586 0.92657 0.91130 0.92084 0.91592 0.87885 0.87290 0.87284 0.75036 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.96 55.43 0.77 -25.30 15 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 15 3 Si 0.87 20.74 26.92 -169.99 -4.58 16.17 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.26 -6.08 6.92 56.52 0.39 -5.69 15 7 C -0.50 -13.41 6.63 -34.44 -0.23 -13.64 15 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 15 9 C 0.05 1.22 2.34 -91.89 -0.21 1.00 15 10 H 0.04 0.97 5.44 -51.93 -0.28 0.69 15 11 C -0.12 -2.45 6.58 -25.32 -0.17 -2.62 15 12 C -0.08 -1.50 6.77 -26.84 -0.18 -1.68 15 13 C -0.07 -1.35 6.14 -104.22 -0.64 -1.99 15 14 C -0.18 -3.21 10.03 -39.50 -0.40 -3.61 15 15 C -0.09 -1.50 10.04 -39.66 -0.40 -1.90 15 16 C -0.22 -3.98 9.89 -39.42 -0.39 -4.37 15 17 C 0.24 5.01 6.69 -83.74 -0.56 4.45 15 18 N -0.87 -17.03 8.92 32.43 0.29 -16.74 15 19 C -0.13 -2.90 5.58 -104.01 -0.58 -3.48 15 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.05 1.11 8.13 -51.93 -0.42 0.68 15 22 H 0.07 1.53 7.91 -51.93 -0.41 1.12 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.10 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.11 1.49 8.06 -52.48 -0.42 1.07 15 27 H 0.11 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.42 9.14 6.67 -40.82 -0.27 8.87 15 29 H 0.38 6.14 8.84 -40.82 -0.36 5.78 15 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -28.69 240.90 -7.17 -35.86 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -3.43 Total: 12.39 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -3.85 Total: -26.01 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.06 Total: -42.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.58 Total: 16.17 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.69 -7.17 -35.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299792.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.891 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds