Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47157 * 265.19903 * 3 2 1 5 5 H 1.48506 * 109.46992 * 25.19517 * 3 2 1 6 6 H 1.48493 * 109.47438 * 145.19426 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99976 * 0.38413 * 7 2 1 9 9 C 1.50702 * 120.00188 * 180.37644 * 7 2 1 10 10 H 1.09003 * 110.34768 * 337.24555 * 9 7 2 11 11 C 1.54350 * 110.30368 * 99.37610 * 9 7 2 12 12 C 1.54350 * 102.36952 * 145.24596 * 11 9 7 13 13 C 1.51390 * 105.17025 * 333.67483 * 12 11 9 14 14 C 1.38566 * 130.34635 * 197.13716 * 13 12 11 15 15 C 1.38144 * 120.37722 * 180.02562 * 14 13 12 16 16 C 1.38128 * 120.01559 * 0.04481 * 15 14 13 17 17 C 1.38780 * 119.84988 * 359.97438 * 16 15 14 18 18 N 1.39672 * 119.97007 * 180.02562 * 17 16 15 19 19 C 1.38084 * 109.76081 * 17.18134 * 13 12 11 20 20 H 0.96996 * 119.99608 * 0.02562 * 1 2 3 21 21 H 1.08998 * 110.82973 * 263.47059 * 11 9 7 22 22 H 1.09001 * 110.82634 * 27.03125 * 11 9 7 23 23 H 1.08997 * 110.30306 * 214.75127 * 12 11 9 24 24 H 1.09003 * 110.29912 * 92.59269 * 12 11 9 25 25 H 1.08007 * 119.80952 * 0.02979 * 14 13 12 26 26 H 1.08004 * 119.99430 * 180.02562 * 15 14 13 27 27 H 1.07994 * 120.07340 * 179.97438 * 16 15 14 28 28 H 0.96995 * 120.00413 * 179.97438 * 18 17 16 29 29 H 0.97004 * 120.00092 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5982 1.9878 -1.3952 5 1 1.3996 2.6799 0.5960 6 1 3.4923 1.4716 0.7991 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 -0.0053 9 6 3.5116 -1.1941 0.0091 10 1 3.8928 -0.2505 -0.3813 11 6 4.0390 -1.4340 1.4397 12 6 5.3169 -2.2618 1.1865 13 6 5.0779 -2.9661 -0.1321 14 6 5.7192 -4.0578 -0.6952 15 6 5.3274 -4.5378 -1.9299 16 6 4.2916 -3.9286 -2.6111 17 6 3.6461 -2.8347 -2.0520 18 7 2.5981 -2.2171 -2.7385 19 6 4.0414 -2.3529 -0.8078 20 1 -0.4849 0.8400 -0.0004 21 1 4.2794 -0.4894 1.9277 22 1 3.3190 -2.0030 2.0279 23 1 5.4596 -2.9907 1.9842 24 1 6.1842 -1.6056 1.1129 25 1 6.5299 -4.5362 -0.1656 26 1 5.8313 -5.3894 -2.3628 27 1 3.9849 -4.3028 -3.5766 28 1 2.1464 -1.4528 -2.3480 29 1 2.3220 -2.5527 -3.6057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261299792.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = -6.763408 kcal Electronic energy + Delta-G solvation = -12927.158930 eV Core-core repulsion = 10813.224546 eV Total energy + Delta-G solvation = -2113.934384 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.84705 -36.86530 -35.42870 -34.11910 -30.56304 -29.51494 -28.67159 -25.21328 -22.96324 -21.71210 -20.91712 -19.12008 -17.58944 -17.12043 -16.41164 -16.10959 -15.35597 -15.08081 -14.69185 -14.23099 -13.84101 -13.71551 -13.26340 -12.92946 -12.41156 -12.35298 -11.87211 -11.83161 -11.72800 -11.33596 -11.24328 -11.06951 -10.69352 -9.17026 -8.26741 -8.09540 -6.27986 0.73454 0.97710 1.33582 1.36965 1.46946 2.34641 3.06122 3.16843 3.37660 3.89666 4.08709 4.37411 4.43944 4.52664 4.68870 4.85294 4.87222 5.00707 5.08487 5.30850 5.34951 5.47393 5.50224 5.68372 5.72913 5.84213 6.06545 6.28865 6.41453 6.74441 6.90683 7.26126 7.35172 8.89264 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.038091 B = 0.013318 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.906424 B = 2101.873844 C = 2544.277649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.019 3.981 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.489 4.489 8 H 0.027 0.973 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.118 4.118 12 C -0.074 4.074 13 C -0.077 4.077 14 C -0.182 4.182 15 C -0.081 4.081 16 C -0.222 4.222 17 C 0.216 3.784 18 N -0.873 5.873 19 C -0.177 4.177 20 H 0.265 0.735 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.135 0.865 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.402 0.598 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -4.460 -2.773 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.528 4.528 8 H 0.046 0.954 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.156 4.156 12 C -0.111 4.111 13 C -0.077 4.077 14 C -0.202 4.202 15 C -0.099 4.099 16 C -0.245 4.245 17 C 0.110 3.890 18 N -0.413 5.413 19 C -0.181 4.181 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.153 0.847 26 H 0.167 0.833 27 H 0.151 0.849 28 H 0.232 0.768 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.279 -4.345 -2.756 12.397 hybrid contribution -0.809 1.040 -0.212 1.335 sum 10.470 -3.304 -2.968 11.373 Atomic orbital electron populations 1.70047 1.07956 1.27843 1.52627 1.25814 0.95289 1.02222 0.94509 0.85929 0.79461 0.79413 0.79317 1.19480 1.21595 1.17264 1.20965 0.90298 0.92341 1.49147 0.95423 1.18620 0.94019 0.92457 0.91948 0.94803 1.22490 0.96112 0.99195 0.97842 1.21061 0.98048 0.98198 0.93760 1.20757 0.94872 0.95431 0.96683 1.20572 1.03521 0.98529 0.97593 1.20997 0.95686 0.99133 0.94109 1.20711 1.02097 0.98983 1.02728 1.17832 0.88317 0.92161 0.90675 1.42804 1.37842 1.37713 1.22896 1.20592 1.00224 1.01956 0.95354 0.92619 0.91753 0.92915 0.89739 0.89409 0.84735 0.83307 0.84855 0.76759 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.96 21.45 0.30 -56.76 15 2 C 0.02 1.07 5.47 84.65 0.46 1.53 15 3 Si 0.93 43.26 26.92 68.60 1.85 45.10 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 15 6 H -0.25 -10.79 6.92 99.48 0.69 -10.10 15 7 C -0.49 -27.08 6.63 25.60 0.17 -26.91 15 8 H 0.03 1.75 8.06 -2.91 -0.02 1.73 15 9 C 0.05 2.28 2.34 -11.62 -0.03 2.25 15 10 H 0.03 1.62 5.44 -2.39 -0.01 1.60 15 11 C -0.12 -4.88 6.58 31.51 0.21 -4.67 15 12 C -0.07 -2.49 6.77 30.53 0.21 -2.28 15 13 C -0.08 -2.88 6.14 -19.60 -0.12 -3.00 15 14 C -0.18 -5.75 10.03 22.33 0.22 -5.52 15 15 C -0.08 -2.39 10.04 22.22 0.22 -2.17 15 16 C -0.22 -7.43 9.89 22.37 0.22 -7.21 15 17 C 0.22 8.83 6.69 38.24 0.26 9.08 15 18 N -0.87 -34.81 8.92 -51.30 -0.46 -35.27 15 19 C -0.18 -7.72 5.58 -19.47 -0.11 -7.83 15 20 H 0.26 15.08 8.31 -92.71 -0.77 14.30 15 21 H 0.06 2.48 8.13 -2.39 -0.02 2.46 15 22 H 0.05 2.31 7.91 -2.39 -0.02 2.29 15 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.13 3.38 8.06 -2.91 -0.02 3.36 15 26 H 0.15 3.22 8.06 -2.91 -0.02 3.19 15 27 H 0.13 3.70 8.06 -2.91 -0.02 3.68 15 28 H 0.40 18.38 6.67 -92.71 -0.62 17.76 15 29 H 0.40 12.81 8.84 -92.71 -0.82 11.99 15 Total: -1.00 -63.53 240.90 3.11 -60.42 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.29 Total: 33.24 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 1.71 Total: -46.73 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -0.16 Total: -92.03 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.85 Total: 45.10 kcal Total: -63.53 3.11 -60.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299792.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.657 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds