Wall clock time and date at job start Mon Mar 30 2020 02:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99678 * 2 1 4 4 H 1.48496 * 109.47131 * 239.99742 * 3 2 1 5 5 H 1.48496 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47203 * 119.99820 * 3 2 1 7 7 C 1.37871 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99899 * 173.42678 * 7 2 1 9 9 C 1.50696 * 119.99962 * 353.44028 * 7 2 1 10 10 H 1.09008 * 110.26785 * 325.85522 * 9 7 2 11 11 C 1.54339 * 110.30781 * 87.93516 * 9 7 2 12 12 C 1.54330 * 102.40117 * 92.54747 * 11 9 7 13 13 C 1.51397 * 105.17991 * 26.38165 * 12 11 9 14 14 C 1.38566 * 130.30459 * 162.79218 * 13 12 11 15 15 C 1.37962 * 120.32147 * 179.97438 * 14 13 12 16 16 C 1.38932 * 119.85505 * 359.97438 * 15 14 13 17 17 N 1.39677 * 120.11226 * 180.02562 * 16 15 14 18 18 C 1.38773 * 119.77553 * 0.02562 * 16 15 14 19 19 C 1.38288 * 109.73076 * 342.79215 * 13 12 11 20 20 H 0.96998 * 119.99768 * 174.60269 * 1 2 3 21 21 H 1.09006 * 110.81973 * 210.77767 * 11 9 7 22 22 H 1.09002 * 110.81739 * 334.31640 * 11 9 7 23 23 H 1.09001 * 110.30080 * 145.30554 * 12 11 9 24 24 H 1.08996 * 110.30358 * 267.35781 * 12 11 9 25 25 H 1.08001 * 119.84408 * 0.02562 * 14 13 12 26 26 H 1.07990 * 120.07477 * 180.02562 * 15 14 13 27 27 H 0.96999 * 119.99509 * 359.97438 * 17 16 15 28 28 H 0.96996 * 119.99846 * 180.02562 * 17 16 15 29 29 H 1.08002 * 119.92368 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1970 -0.1065 9 6 1.2586 -2.4947 0.1502 10 1 0.3979 -2.3631 0.8060 11 6 0.8053 -3.0142 -1.2306 12 6 1.9734 -3.9370 -1.6374 13 6 2.5883 -4.3968 -0.3325 14 6 3.4400 -5.4572 -0.0675 15 6 3.8819 -5.6911 1.2183 16 6 3.4717 -4.8592 2.2527 17 7 3.9162 -5.0907 3.5564 18 6 2.6187 -3.7975 1.9861 19 6 2.1773 -3.5675 0.6950 20 1 -0.4850 -0.8363 -0.0790 21 1 -0.1234 -3.5788 -1.1464 22 1 0.6970 -2.1916 -1.9376 23 1 1.6011 -4.7919 -2.2019 24 1 2.7043 -3.3842 -2.2275 25 1 3.7601 -6.1034 -0.8715 26 1 4.5459 -6.5184 1.4203 27 1 4.5121 -5.8335 3.7409 28 1 3.6285 -4.5091 4.2774 29 1 2.2980 -3.1495 2.7885 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261304009.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:29 Heat of formation + Delta-G solvation = -11.444430 kcal Electronic energy + Delta-G solvation = -12678.409887 eV Core-core repulsion = 10564.272519 eV Total energy + Delta-G solvation = -2114.137368 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.87840 -37.69436 -35.08989 -33.42556 -31.70406 -28.91528 -27.88803 -25.66598 -23.45599 -21.54277 -21.49865 -18.95201 -17.71213 -17.16252 -16.24472 -16.02342 -15.66166 -15.26657 -14.74699 -14.22552 -13.89382 -13.79443 -13.15653 -12.80993 -12.40674 -12.36840 -12.04731 -11.96857 -11.76471 -11.41353 -11.12804 -10.64174 -10.42886 -9.48525 -8.61699 -8.19768 -6.32029 0.66441 0.80408 1.51678 1.59096 1.79193 2.56469 3.05015 3.07828 3.18366 3.83092 4.03549 4.25521 4.36128 4.42536 4.66904 4.69794 4.85674 5.03160 5.06952 5.17579 5.24814 5.39593 5.42015 5.58014 5.71531 6.06866 6.09110 6.12696 6.24700 6.61398 6.69149 7.09946 7.45766 8.76916 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.035935 B = 0.010851 C = 0.009304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.994230 B = 2579.682072 C = 3008.782216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.028 4.028 3 Si 1.111 2.889 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.586 4.586 8 H 0.037 0.963 9 C 0.052 3.948 10 H 0.002 0.998 11 C -0.113 4.113 12 C -0.053 4.053 13 C -0.181 4.181 14 C -0.062 4.062 15 C -0.211 4.211 16 C 0.213 3.787 17 N -0.868 5.868 18 C -0.215 4.215 19 C -0.037 4.037 20 H 0.259 0.741 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.144 0.856 26 H 0.151 0.849 27 H 0.409 0.591 28 H 0.401 0.599 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -10.629 2.627 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.226 4.226 3 Si 0.933 3.067 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.624 4.624 8 H 0.055 0.945 9 C 0.034 3.966 10 H 0.021 0.979 11 C -0.151 4.151 12 C -0.090 4.090 13 C -0.183 4.183 14 C -0.080 4.080 15 C -0.233 4.233 16 C 0.108 3.892 17 N -0.409 5.409 18 C -0.238 4.238 19 C -0.038 4.038 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.162 0.838 26 H 0.169 0.831 27 H 0.239 0.761 28 H 0.230 0.770 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.603 -8.997 2.668 12.078 hybrid contribution -0.149 -1.336 0.400 1.403 sum 7.454 -10.334 3.067 13.106 Atomic orbital electron populations 1.70882 1.07722 1.30290 1.48328 1.27210 0.96567 1.05982 0.92847 0.83018 0.74224 0.71693 0.77785 1.19534 1.20649 1.20073 1.21980 0.94130 0.92269 1.54047 0.94479 1.18526 0.92927 0.92588 0.92593 0.97942 1.22356 0.96845 0.97566 0.98361 1.20714 0.96155 0.97991 0.94174 1.20629 1.03206 0.98505 0.95976 1.20612 0.94833 0.95499 0.97088 1.20662 1.07631 1.03369 0.91680 1.17636 0.91997 0.92640 0.86893 1.42272 1.56461 1.37188 1.04993 1.20069 1.05916 1.01416 0.96378 1.20817 0.95578 0.94057 0.93320 0.93099 0.93247 0.93591 0.89898 0.91966 0.83848 0.83143 0.76059 0.77011 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 13.57 21.45 0.29 -57.77 15 2 C -0.03 -1.64 5.45 84.65 0.46 -1.18 15 3 Si 1.11 51.49 29.91 68.60 2.05 53.55 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.59 -34.32 8.25 25.60 0.21 -34.11 15 8 H 0.04 2.21 7.82 -2.91 -0.02 2.18 15 9 C 0.05 2.81 2.37 -11.61 -0.03 2.79 15 10 H 0.00 0.14 7.16 -2.38 -0.02 0.13 15 11 C -0.11 -5.37 6.39 31.50 0.20 -5.17 15 12 C -0.05 -2.14 6.76 30.52 0.21 -1.93 15 13 C -0.18 -7.43 6.14 -19.55 -0.12 -7.55 15 14 C -0.06 -2.03 10.03 22.28 0.22 -1.80 15 15 C -0.21 -6.29 9.90 22.37 0.22 -6.07 15 16 C 0.21 7.04 6.75 38.19 0.26 7.30 15 17 N -0.87 -20.37 9.09 -51.44 -0.47 -20.83 15 18 C -0.21 -9.09 9.89 22.43 0.22 -8.87 15 19 C -0.04 -1.74 5.43 -19.60 -0.11 -1.85 15 20 H 0.26 16.23 6.81 -92.71 -0.63 15.60 15 21 H 0.05 2.17 8.14 -2.38 -0.02 2.16 15 22 H 0.05 2.33 7.89 -2.39 -0.02 2.31 15 23 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 24 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.14 3.65 8.06 -2.91 -0.02 3.62 15 26 H 0.15 3.26 8.06 -2.92 -0.02 3.24 15 27 H 0.41 6.89 8.84 -92.71 -0.82 6.07 15 28 H 0.40 8.61 8.84 -92.71 -0.82 7.79 15 29 H 0.10 4.24 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -68.75 247.20 3.29 -65.46 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.34 Total: 18.03 kcal Atomic # 6 Polarization: -60.18 SS G_CDS: 1.75 Total: -58.43 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -0.18 Total: -78.60 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.55 kcal Total: -68.75 3.29 -65.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261304009.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.016 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds