Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39205 * 119.05488 * 2 1 4 4 C 1.37988 * 121.33408 * 179.97438 * 3 2 1 5 5 C 1.38541 * 119.32789 * 0.02562 * 4 3 2 6 6 C 1.46032 * 137.94402 * 179.97438 * 5 4 3 7 7 C 1.38444 * 127.76299 * 0.04575 * 6 5 4 8 8 H 1.08002 * 120.00494 * 0.02562 * 7 6 5 9 9 C 1.40808 * 119.99574 * 179.72024 * 7 6 5 10 10 N 1.30384 * 120.00521 * 0.27291 * 9 7 6 11 11 Si 1.86803 * 119.99812 * 180.27684 * 9 7 6 12 12 H 1.48496 * 109.47187 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47428 * 120.00130 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00002 * 11 9 7 15 15 O 1.35409 * 104.46971 * 180.29949 * 6 5 4 16 16 N 1.20855 * 113.51626 * 359.52395 * 15 6 5 17 17 C 1.31479 * 114.20260 * 0.51970 * 16 15 6 18 18 C 1.36133 * 119.05432 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47588 * 90.00121 * 1 2 3 20 20 H 1.09006 * 109.46782 * 210.00001 * 1 2 3 21 21 H 1.08999 * 109.47480 * 329.99811 * 1 2 3 22 22 H 1.07997 * 119.33501 * 0.02562 * 3 2 1 23 23 H 1.08004 * 120.33395 * 179.97438 * 4 3 2 24 24 H 0.96996 * 120.00607 * 179.97438 * 10 9 7 25 25 H 1.08002 * 120.22514 * 0.03692 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1830 1.2169 0.0000 4 6 3.5618 1.2717 0.0005 5 6 4.2878 0.0918 0.0005 6 6 5.6892 -0.3189 0.0005 7 6 6.8107 0.4929 0.0014 8 1 6.6997 1.5672 0.0026 9 6 8.0960 -0.0822 0.0072 10 7 8.2300 -1.3791 0.0064 11 14 9.6091 1.0131 0.0162 12 1 9.1892 2.4375 0.0151 13 1 10.4145 0.7349 1.2324 14 1 10.4267 0.7378 -1.1926 15 8 5.6451 -1.6723 -0.0063 16 7 4.5218 -2.1182 -0.0010 17 6 3.5784 -1.2024 -0.0006 18 6 2.1680 -1.1900 0.0005 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5138 22 1 1.6169 2.1366 0.0004 23 1 4.0697 2.2249 0.0001 24 1 9.1154 -1.7752 0.0100 25 1 1.6163 -2.1185 0.0003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261306683.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = 41.364271 kcal Electronic energy + Delta-G solvation = -12299.749282 eV Core-core repulsion = 10052.068776 eV Total energy + Delta-G solvation = -2247.680506 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.98890 -37.10200 -34.60474 -31.89127 -30.94607 -29.40046 -26.65326 -25.76664 -22.69193 -20.90654 -19.93618 -17.68950 -16.20904 -15.78587 -15.32381 -14.86629 -14.15264 -13.09612 -13.00530 -12.94500 -12.57899 -11.83238 -11.74587 -11.58924 -11.33041 -10.87553 -10.76305 -10.52613 -10.16302 -10.12746 -8.91846 -8.81755 -7.80736 -7.48406 -7.07215 -4.83911 1.93312 2.63504 2.74469 2.83426 2.95046 3.45644 3.59121 4.57425 5.01891 5.19391 5.39554 5.69393 5.90731 5.99532 6.11245 6.24597 6.36380 6.42608 6.51316 6.63268 6.83848 7.37587 7.45944 7.62189 7.72528 7.80469 7.90588 8.05709 8.24594 9.45538 10.48560 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.064824 B = 0.009283 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.832374 B = 3015.702373 C = 3432.383092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.033 4.033 3 C -0.261 4.261 4 C 0.015 3.985 5 C -0.318 4.318 6 C 0.171 3.829 7 C -0.365 4.365 8 H 0.118 0.882 9 C 0.055 3.945 10 N -0.720 5.720 11 Si 0.938 3.062 12 H -0.251 1.251 13 H -0.263 1.263 14 H -0.263 1.263 15 O 0.066 5.934 16 N -0.481 5.481 17 C 0.091 3.909 18 C -0.171 4.171 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.301 0.699 25 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 5.119 -0.005 5.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.036 4.036 3 C -0.282 4.282 4 C -0.004 4.004 5 C -0.326 4.326 6 C 0.109 3.891 7 C -0.393 4.393 8 H 0.135 0.865 9 C -0.174 4.174 10 N -0.342 5.342 11 Si 0.759 3.241 12 H -0.174 1.174 13 H -0.188 1.188 14 H -0.188 1.188 15 O 0.025 5.975 16 N -0.210 5.210 17 C -0.059 4.059 18 C -0.193 4.193 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.118 0.882 23 H 0.121 0.879 24 H 0.113 0.887 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.682 3.556 -0.002 3.621 hybrid contribution 0.477 1.138 -0.002 1.234 sum -0.205 4.694 -0.004 4.699 Atomic orbital electron populations 1.20743 0.92862 1.01518 1.01234 1.19015 0.94309 0.92927 0.97363 1.20107 0.93294 0.95794 1.18975 1.19806 0.92944 0.94815 0.92813 1.20830 0.91713 0.94918 1.25139 1.22143 0.92183 0.84330 0.90425 1.19106 0.87815 0.95297 1.37087 0.86452 1.26572 1.02335 0.96057 0.92419 1.69574 1.28268 1.11906 1.24496 0.85729 0.78332 0.80519 0.79488 1.17399 1.18801 1.18803 1.85113 1.22018 1.18238 1.72138 1.73326 0.89845 1.21960 1.35836 1.21321 0.94839 0.90088 0.99607 1.19236 0.89607 0.96543 1.13902 0.92113 0.92472 0.92365 0.88239 0.87924 0.88695 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.95 36.00 0.36 -1.33 15 2 C -0.03 -0.70 5.84 -105.02 -0.61 -1.31 15 3 C -0.26 -5.49 9.61 -39.31 -0.38 -5.86 15 4 C 0.02 0.34 10.09 -39.56 -0.40 -0.05 15 5 C -0.32 -8.44 6.73 -102.84 -0.69 -9.13 15 6 C 0.17 4.65 7.11 -36.38 -0.26 4.39 15 7 C -0.37 -8.79 9.37 -38.53 -0.36 -9.15 15 8 H 0.12 2.53 7.86 -52.49 -0.41 2.12 15 9 C 0.06 1.22 5.51 -17.20 -0.09 1.13 15 10 N -0.72 -17.04 12.09 55.59 0.67 -16.36 15 11 Si 0.94 15.70 29.57 -169.99 -5.03 10.67 15 12 H -0.25 -4.07 7.11 56.52 0.40 -3.67 15 13 H -0.26 -4.33 7.11 56.52 0.40 -3.92 15 14 H -0.26 -4.32 7.11 56.52 0.40 -3.92 15 15 O 0.07 1.92 9.56 13.33 0.13 2.05 15 16 N -0.48 -14.05 11.96 33.25 0.40 -13.65 15 17 C 0.09 2.50 7.59 -83.14 -0.63 1.87 15 18 C -0.17 -4.08 9.67 -39.28 -0.38 -4.46 15 19 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.06 0.83 8.06 -51.93 -0.42 0.41 15 21 H 0.06 0.81 8.07 -51.93 -0.42 0.39 15 22 H 0.10 1.79 8.06 -52.49 -0.42 1.37 15 23 H 0.10 2.06 8.06 -52.48 -0.42 1.63 15 24 H 0.30 6.15 8.29 -40.82 -0.34 5.82 15 25 H 0.10 2.25 8.06 -52.49 -0.42 1.82 15 LS Contribution 230.53 15.07 3.47 3.47 Total: -1.00 -29.34 230.53 -5.88 -35.22 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -2.07 Total: 2.50 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -3.45 Total: -23.91 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 1.07 Total: -30.01 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.13 Total: 2.05 kcal Atomic # 14 Polarization: 15.70 SS G_CDS: -5.03 Total: 10.67 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.34 -5.88 -35.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306683.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.586 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds