Wall clock time and date at job start Mon Mar 30 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39211 * 119.33532 * 2 1 4 4 C 1.36125 * 121.89057 * 180.02562 * 3 2 1 5 5 C 1.41035 * 119.56104 * 359.96780 * 4 3 2 6 6 N 1.31479 * 136.35745 * 179.97438 * 5 4 3 7 7 O 1.20852 * 114.20496 * 180.02562 * 6 5 4 8 8 C 1.35414 * 113.51541 * 0.02562 * 7 6 5 9 9 C 1.38445 * 127.76614 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00620 * 179.97438 * 9 8 7 11 11 C 1.40815 * 119.99621 * 359.96726 * 9 8 7 12 12 N 1.30389 * 120.00294 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99722 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46591 * 90.00673 * 13 11 9 15 15 H 1.48498 * 109.46950 * 210.00267 * 13 11 9 16 16 H 1.48498 * 109.47122 * 330.00872 * 13 11 9 17 17 C 1.46025 * 104.47324 * 0.02562 * 8 7 6 18 18 C 1.37988 * 119.33550 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47502 * 270.00473 * 1 2 3 20 20 H 1.09005 * 109.47510 * 30.00379 * 1 2 3 21 21 H 1.09005 * 109.47431 * 150.00395 * 1 2 3 22 22 H 1.07999 * 119.05112 * 0.02562 * 3 2 1 23 23 H 1.07997 * 120.22162 * 180.25168 * 4 3 2 24 24 H 0.96993 * 120.00148 * 179.97438 * 12 11 9 25 25 H 1.08000 * 120.32753 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.2136 0.0000 4 6 3.5488 1.2743 -0.0005 5 6 4.2986 0.0798 -0.0004 6 7 5.5730 -0.2437 -0.0011 7 8 5.7821 -1.4340 -0.0011 8 6 4.6527 -2.1810 -0.0008 9 6 4.5492 -3.5615 -0.0002 10 1 3.5763 -4.0302 0.0003 11 6 5.7127 -4.3547 -0.0005 12 7 6.8874 -3.7890 -0.0008 13 14 5.5731 -6.2175 -0.0004 14 1 5.5359 -6.7111 -1.4005 15 1 6.7453 -6.8017 0.6994 16 1 4.3271 -6.6205 0.6998 17 6 3.5683 -1.2030 -0.0013 18 6 2.1830 -1.2029 0.0005 19 1 -0.3634 0.0001 1.0276 20 1 -0.3634 0.8900 -0.5139 21 1 -0.3634 -0.8900 -0.5138 22 1 1.6228 2.1333 0.0004 23 1 4.0503 2.2308 0.0036 24 1 7.6889 -4.3354 -0.0007 25 1 1.6375 -2.1350 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261310086.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:58 Heat of formation + Delta-G solvation = 41.357508 kcal Electronic energy + Delta-G solvation = -12326.327470 eV Core-core repulsion = 10078.646671 eV Total energy + Delta-G solvation = -2247.680799 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.00459 -37.06871 -34.61088 -31.79343 -30.93135 -29.28501 -27.45729 -25.10754 -22.65264 -20.95928 -19.94335 -17.89158 -16.12495 -15.83794 -15.33691 -14.81605 -14.06446 -13.18968 -12.86829 -12.82906 -12.62268 -11.84038 -11.73885 -11.68323 -11.30165 -10.88405 -10.77699 -10.52148 -10.13901 -10.10645 -8.89450 -8.83413 -7.87856 -7.48969 -7.07308 -4.81728 1.92885 2.65554 2.73966 2.81388 2.94060 3.45197 3.56743 4.57461 5.00778 5.18149 5.41054 5.80715 5.90301 5.98664 6.25165 6.28200 6.37523 6.43649 6.47506 6.64482 6.85195 7.38310 7.42857 7.59609 7.71439 7.79782 7.89703 8.04481 8.23042 9.44931 10.46929 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.046489 B = 0.010346 C = 0.008502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.145173 B = 2705.590248 C = 3292.592347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.239 4.239 3 C -0.055 4.055 4 C -0.169 4.169 5 C 0.087 3.913 6 N -0.479 5.479 7 O 0.066 5.934 8 C 0.170 3.830 9 C -0.364 4.364 10 H 0.117 0.883 11 C 0.055 3.945 12 N -0.720 5.720 13 Si 0.938 3.062 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.252 1.252 17 C -0.313 4.313 18 C 0.017 3.983 19 H 0.045 0.955 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.302 0.698 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -2.954 -0.010 5.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.242 4.242 3 C -0.076 4.076 4 C -0.191 4.191 5 C -0.063 4.063 6 N -0.208 5.208 7 O 0.025 5.975 8 C 0.108 3.892 9 C -0.392 4.392 10 H 0.135 0.865 11 C -0.174 4.174 12 N -0.342 5.342 13 Si 0.759 3.241 14 H -0.183 1.183 15 H -0.191 1.191 16 H -0.175 1.175 17 C -0.321 4.321 18 C -0.002 4.002 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.119 0.881 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.749 -2.337 -0.008 4.418 hybrid contribution -0.689 -0.938 0.006 1.164 sum -4.438 -3.275 -0.001 5.516 Atomic orbital electron populations 1.20393 0.92886 1.00613 1.00056 1.19012 0.94342 0.92645 1.18172 1.20088 0.93246 0.96215 0.98011 1.19412 0.92710 0.94116 1.12860 1.21358 0.90044 0.94969 0.99886 1.73325 1.16664 0.95199 1.35649 1.85115 1.29749 1.10491 1.72113 1.22124 0.84192 0.92279 0.90579 1.19073 0.95731 0.87379 1.37033 0.86485 1.26574 0.94238 1.04153 0.92436 1.69568 0.99624 1.40655 1.24394 0.85772 0.80138 0.77940 0.80204 1.18318 1.19146 1.17507 1.20807 0.94221 0.92341 1.24747 1.19663 0.90974 0.96114 0.93410 0.93607 0.93379 0.93313 0.88073 0.87839 0.88633 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.98 36.00 0.36 -0.97 15 2 C -0.24 -4.95 5.90 -104.36 -0.62 -5.57 15 3 C -0.05 -1.14 9.51 -39.98 -0.38 -1.52 15 4 C -0.17 -3.99 10.10 -39.28 -0.40 -4.39 15 5 C 0.09 2.37 7.59 -83.14 -0.63 1.74 15 6 N -0.48 -13.95 11.96 33.25 0.40 -13.55 15 7 O 0.07 1.94 9.56 13.32 0.13 2.06 15 8 C 0.17 4.61 7.11 -36.39 -0.26 4.35 15 9 C -0.36 -8.74 9.37 -38.53 -0.36 -9.10 15 10 H 0.12 2.51 7.86 -52.49 -0.41 2.10 15 11 C 0.06 1.22 5.51 -17.19 -0.09 1.12 15 12 N -0.72 -16.99 12.09 55.60 0.67 -16.32 15 13 Si 0.94 15.65 29.57 -169.99 -5.03 10.63 15 14 H -0.26 -4.24 7.11 56.52 0.40 -3.84 15 15 H -0.27 -4.33 7.11 56.52 0.40 -3.93 15 16 H -0.25 -4.09 7.11 56.52 0.40 -3.69 15 17 C -0.31 -8.27 6.73 -102.85 -0.69 -8.96 15 18 C 0.02 0.39 9.70 -39.56 -0.38 0.01 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 0.69 8.07 -51.93 -0.42 0.27 15 21 H 0.05 0.72 8.07 -51.93 -0.42 0.30 15 22 H 0.10 1.76 8.06 -52.49 -0.42 1.33 15 23 H 0.10 2.22 8.06 -52.49 -0.42 1.80 15 24 H 0.30 6.17 8.29 -40.82 -0.34 5.83 15 25 H 0.10 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 230.58 15.07 3.47 3.47 Total: -1.00 -29.04 230.58 -5.88 -34.92 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -2.08 Total: 2.07 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.45 Total: -23.29 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 1.07 Total: -29.87 kcal Atomic # 8 Polarization: 1.94 SS G_CDS: 0.13 Total: 2.06 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.63 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.04 -5.88 -34.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310086.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.279 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds