Wall clock time and date at job start Mon Mar 30 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39211 * 119.33532 * 2 1 4 4 C 1.36125 * 121.89057 * 180.02562 * 3 2 1 5 5 C 1.41035 * 119.56104 * 359.96780 * 4 3 2 6 6 N 1.31479 * 136.35745 * 179.97438 * 5 4 3 7 7 O 1.20852 * 114.20496 * 180.02562 * 6 5 4 8 8 C 1.35414 * 113.51541 * 0.02562 * 7 6 5 9 9 C 1.38445 * 127.76614 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00620 * 179.97438 * 9 8 7 11 11 C 1.40815 * 119.99621 * 359.96726 * 9 8 7 12 12 N 1.30389 * 120.00294 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99722 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46591 * 90.00673 * 13 11 9 15 15 H 1.48498 * 109.46950 * 210.00267 * 13 11 9 16 16 H 1.48498 * 109.47122 * 330.00872 * 13 11 9 17 17 C 1.46025 * 104.47324 * 0.02562 * 8 7 6 18 18 C 1.37988 * 119.33550 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47502 * 270.00473 * 1 2 3 20 20 H 1.09005 * 109.47510 * 30.00379 * 1 2 3 21 21 H 1.09005 * 109.47431 * 150.00395 * 1 2 3 22 22 H 1.07999 * 119.05112 * 0.02562 * 3 2 1 23 23 H 1.07997 * 120.22162 * 180.25168 * 4 3 2 24 24 H 0.96993 * 120.00148 * 179.97438 * 12 11 9 25 25 H 1.08000 * 120.32753 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.2136 0.0000 4 6 3.5488 1.2743 -0.0005 5 6 4.2986 0.0798 -0.0004 6 7 5.5730 -0.2437 -0.0011 7 8 5.7821 -1.4340 -0.0011 8 6 4.6527 -2.1810 -0.0008 9 6 4.5492 -3.5615 -0.0002 10 1 3.5763 -4.0302 0.0003 11 6 5.7127 -4.3547 -0.0005 12 7 6.8874 -3.7890 -0.0008 13 14 5.5731 -6.2175 -0.0004 14 1 5.5359 -6.7111 -1.4005 15 1 6.7453 -6.8017 0.6994 16 1 4.3271 -6.6205 0.6998 17 6 3.5683 -1.2030 -0.0013 18 6 2.1830 -1.2029 0.0005 19 1 -0.3634 0.0001 1.0276 20 1 -0.3634 0.8900 -0.5139 21 1 -0.3634 -0.8900 -0.5138 22 1 1.6228 2.1333 0.0004 23 1 4.0503 2.2308 0.0036 24 1 7.6889 -4.3354 -0.0007 25 1 1.6375 -2.1350 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261310086.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:57 Heat of formation + Delta-G solvation = 23.954133 kcal Electronic energy + Delta-G solvation = -12327.082137 eV Core-core repulsion = 10078.646671 eV Total energy + Delta-G solvation = -2248.435466 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.94800 -38.81405 -36.39611 -33.53940 -32.77941 -31.08871 -29.16004 -26.86205 -24.43313 -22.75689 -21.77464 -19.72664 -17.92457 -17.58666 -17.36608 -16.52067 -15.62951 -14.90046 -14.53673 -14.26448 -14.20610 -13.61535 -13.32934 -13.21544 -12.72271 -12.46829 -12.30360 -12.08612 -11.83938 -11.67359 -10.76449 -10.75442 -9.72166 -9.18171 -8.91554 -6.72958 0.12263 1.00930 1.34809 1.39296 1.58497 1.83411 2.05744 2.75748 3.18527 3.28659 3.61497 4.14132 4.25122 4.44091 4.64257 4.70244 4.80407 4.95204 5.01841 5.06215 5.35478 5.60092 5.65813 5.80191 5.93376 6.01935 6.08692 6.16620 6.50141 7.80238 8.49331 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.046489 B = 0.010346 C = 0.008502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.145173 B = 2705.590248 C = 3292.592347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.227 4.227 3 C -0.044 4.044 4 C -0.198 4.198 5 C 0.061 3.939 6 N -0.529 5.529 7 O 0.032 5.968 8 C 0.129 3.871 9 C -0.368 4.368 10 H 0.141 0.859 11 C 0.012 3.988 12 N -0.759 5.759 13 Si 1.025 2.975 14 H -0.250 1.250 15 H -0.259 1.259 16 H -0.239 1.239 17 C -0.343 4.343 18 C -0.001 4.001 19 H 0.063 0.937 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.146 0.854 23 H 0.115 0.885 24 H 0.315 0.685 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -4.298 0.001 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.230 4.230 3 C -0.064 4.064 4 C -0.220 4.220 5 C -0.086 4.086 6 N -0.265 5.265 7 O -0.005 6.005 8 C 0.068 3.932 9 C -0.395 4.395 10 H 0.159 0.841 11 C -0.213 4.213 12 N -0.382 5.382 13 Si 0.840 3.160 14 H -0.174 1.174 15 H -0.182 1.182 16 H -0.161 1.161 17 C -0.351 4.351 18 C -0.020 4.020 19 H 0.082 0.918 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.164 0.836 23 H 0.133 0.867 24 H 0.127 0.873 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.419 -3.668 0.004 7.393 hybrid contribution 0.037 -0.483 0.003 0.484 sum -6.382 -4.151 0.007 7.613 Atomic orbital electron populations 1.20465 0.88853 1.02577 1.01782 1.19689 0.97203 0.91660 1.14483 1.20638 0.92350 0.98337 0.95081 1.19786 0.94048 0.93534 1.14635 1.22019 0.90078 0.96890 0.99633 1.73224 1.18106 0.95578 1.39594 1.84996 1.30864 1.10771 1.73901 1.22821 0.84273 0.93739 0.92334 1.19757 0.97809 0.86647 1.35317 0.84143 1.27846 0.92892 1.09716 0.90853 1.69639 1.01071 1.43495 1.24021 0.84560 0.80805 0.70005 0.80676 1.17403 1.18246 1.16118 1.21267 0.95749 0.91833 1.26256 1.20073 0.89713 0.98292 0.93913 0.91823 0.91011 0.91901 0.83599 0.86704 0.87266 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 9.98 71.23 0.71 -1.47 15 2 C -0.23 -8.78 5.90 -19.69 -0.12 -8.89 15 3 C -0.04 -1.72 9.51 22.01 0.21 -1.51 15 4 C -0.20 -9.40 10.10 22.46 0.23 -9.17 15 5 C 0.06 3.45 7.59 42.36 0.32 3.78 15 6 N -0.53 -32.85 11.96 -48.71 -0.58 -33.44 15 7 O 0.03 1.98 9.56 57.86 0.55 2.53 15 8 C 0.13 7.31 7.11 24.34 0.17 7.48 15 9 C -0.37 -17.88 9.37 22.95 0.22 -17.67 15 10 H 0.14 5.90 7.86 -2.92 -0.02 5.87 15 11 C 0.01 0.54 5.51 85.54 0.47 1.01 15 12 N -0.76 -36.76 12.09 21.98 0.27 -36.50 15 13 Si 1.02 30.49 29.57 68.60 2.03 32.51 15 14 H -0.25 -7.10 7.11 99.48 0.71 -6.39 15 15 H -0.26 -7.30 7.11 99.48 0.71 -6.59 15 16 H -0.24 -6.57 7.11 99.48 0.71 -5.86 15 17 C -0.34 -18.61 6.73 -18.71 -0.13 -18.74 15 18 C 0.00 -0.06 9.70 22.28 0.22 0.16 15 19 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.07 1.65 8.07 -2.38 -0.02 1.63 15 21 H 0.06 1.56 8.07 -2.38 -0.02 1.54 15 22 H 0.15 4.39 8.06 -2.91 -0.02 4.37 15 23 H 0.11 4.99 8.06 -2.91 -0.02 4.97 15 24 H 0.32 13.07 8.29 -92.71 -0.77 12.30 15 25 H 0.13 4.83 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -67.48 230.58 5.77 -61.71 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.20 Total: 18.20 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 2.30 Total: -45.02 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -0.32 Total: -69.93 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.55 Total: 2.53 kcal Atomic # 14 Polarization: 30.49 SS G_CDS: 2.03 Total: 32.51 kcal Total: -67.48 5.77 -61.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310086.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.663 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds