Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36130 * 120.22219 * 2 1 4 4 C 1.39205 * 121.89105 * 179.97438 * 3 2 1 5 5 C 1.37987 * 121.33678 * 0.04129 * 4 3 2 6 6 C 1.38541 * 119.32800 * 359.97417 * 5 4 3 7 7 C 1.46024 * 137.95411 * 179.97438 * 6 5 4 8 8 C 1.38453 * 127.76108 * 0.02562 * 7 6 5 9 9 H 1.07993 * 119.99987 * 354.54228 * 8 7 6 10 10 C 1.40803 * 119.99717 * 174.54040 * 8 7 6 11 11 N 1.30393 * 120.00176 * 6.04077 * 10 8 7 12 12 Si 1.86801 * 120.00011 * 186.03887 * 10 8 7 13 13 H 1.48492 * 109.47048 * 94.98451 * 12 10 8 14 14 H 1.48503 * 109.47146 * 214.98684 * 12 10 8 15 15 H 1.48501 * 109.46810 * 334.98180 * 12 10 8 16 16 O 1.35413 * 104.47087 * 179.24616 * 7 6 5 17 17 N 1.20855 * 113.51806 * 0.72524 * 16 7 6 18 18 C 1.31484 * 114.19616 * 359.35628 * 17 16 7 19 19 H 1.09009 * 109.46844 * 90.00241 * 1 2 3 20 20 H 1.09005 * 109.47405 * 330.00537 * 1 2 3 21 21 H 1.08999 * 109.47920 * 210.00158 * 1 2 3 22 22 H 1.08000 * 119.05756 * 359.97438 * 3 2 1 23 23 H 1.08007 * 119.33791 * 180.02562 * 4 3 2 24 24 H 1.07999 * 120.33534 * 180.02562 * 5 4 3 25 25 H 0.97003 * 120.00099 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1921 1.1763 0.0000 4 6 3.5836 1.2168 0.0005 5 6 4.3352 0.0596 0.0002 6 6 3.6920 -1.1674 -0.0001 7 6 4.0546 -2.5819 -0.0009 8 6 5.3254 -3.1313 -0.0011 9 1 6.1905 -2.4910 -0.0897 10 6 5.4899 -4.5250 0.1141 11 7 4.4470 -5.3077 0.1025 12 14 7.2019 -5.2526 0.2836 13 1 7.5143 -5.4534 1.7213 14 1 7.2570 -6.5582 -0.4220 15 1 8.1955 -4.3248 -0.3141 16 8 2.8687 -3.2353 0.0166 17 7 1.9115 -2.4974 0.0131 18 6 2.2168 -1.2186 0.0066 19 1 -0.3633 0.0000 -1.0278 20 1 -0.3634 0.8901 0.5138 21 1 -0.3635 -0.8899 0.5138 22 1 1.6404 2.1047 -0.0004 23 1 4.0851 2.1734 0.0009 24 1 5.4141 0.1099 0.0011 25 1 4.5603 -6.2678 0.1815 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261310207.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = 41.585442 kcal Electronic energy + Delta-G solvation = -12392.456508 eV Core-core repulsion = 10144.785593 eV Total energy + Delta-G solvation = -2247.670915 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.00640 -36.96874 -34.61302 -31.99751 -30.53350 -29.87377 -26.43464 -25.53311 -22.51608 -21.70538 -19.49347 -17.71372 -16.05250 -15.83224 -15.34937 -14.87785 -14.29603 -13.19800 -12.73640 -12.71692 -12.47475 -11.90573 -11.68045 -11.63763 -11.28052 -10.82955 -10.80379 -10.45941 -10.15628 -10.08812 -8.84458 -8.81142 -7.95182 -7.48906 -7.01260 -4.81855 1.92030 2.65210 2.74248 2.81975 2.98260 3.45492 3.57979 4.55618 5.02143 5.18274 5.44032 5.78739 5.93419 6.10019 6.28436 6.35927 6.38304 6.47930 6.63460 6.65880 6.81649 7.38552 7.47592 7.65073 7.68260 7.80985 7.90213 8.05365 8.25457 9.45131 10.47020 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.056498 B = 0.010132 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.477510 B = 2762.821967 C = 3240.803359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.142 4.142 3 C -0.063 4.063 4 C -0.262 4.262 5 C 0.010 3.990 6 C -0.315 4.315 7 C 0.170 3.830 8 C -0.366 4.366 9 H 0.117 0.883 10 C 0.056 3.944 11 N -0.720 5.720 12 Si 0.938 3.062 13 H -0.260 1.260 14 H -0.267 1.267 15 H -0.252 1.252 16 O 0.066 5.934 17 N -0.476 5.476 18 C 0.094 3.906 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 2.259 0.225 4.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C -0.083 4.083 4 C -0.283 4.283 5 C -0.009 4.009 6 C -0.323 4.323 7 C 0.109 3.891 8 C -0.394 4.394 9 H 0.135 0.865 10 C -0.174 4.174 11 N -0.343 5.343 12 Si 0.760 3.240 13 H -0.184 1.184 14 H -0.191 1.191 15 H -0.175 1.175 16 O 0.024 5.976 17 N -0.205 5.205 18 C -0.056 4.056 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.069 1.253 0.237 2.431 hybrid contribution 1.284 0.243 0.053 1.308 sum 3.353 1.496 0.290 3.683 Atomic orbital electron populations 1.20427 0.92580 1.00989 1.00537 1.18273 0.94108 0.89853 1.12338 1.20087 0.94080 0.95500 0.98681 1.20221 0.93457 0.96298 1.18281 1.19807 0.97434 0.90368 0.93296 1.20817 0.93765 0.92799 1.24930 1.22130 0.88580 0.87875 0.90520 1.19074 0.90915 0.92560 1.36817 0.86472 1.26571 1.01163 0.97098 0.92520 1.69581 1.32788 1.07370 1.24529 0.85761 0.79052 0.79124 0.80111 1.18399 1.19134 1.17490 1.85116 1.08948 1.31381 1.72109 1.73313 1.10091 1.01607 1.35481 1.21149 0.92432 0.91999 0.99999 0.93107 0.93139 0.92510 0.88122 0.88261 0.88005 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 10.03 36.00 0.36 -1.37 15 2 C -0.14 -3.33 5.90 -104.33 -0.62 -3.94 15 3 C -0.06 -1.32 9.54 -39.98 -0.38 -1.70 15 4 C -0.26 -5.51 10.00 -39.31 -0.39 -5.90 15 5 C 0.01 0.22 10.09 -39.56 -0.40 -0.18 15 6 C -0.32 -8.33 6.73 -102.85 -0.69 -9.02 15 7 C 0.17 4.62 7.10 -36.38 -0.26 4.36 15 8 C -0.37 -8.78 9.36 -38.53 -0.36 -9.14 15 9 H 0.12 2.52 7.87 -52.49 -0.41 2.11 15 10 C 0.06 1.23 5.50 -17.19 -0.09 1.13 15 11 N -0.72 -17.00 12.11 55.59 0.67 -16.33 15 12 Si 0.94 15.69 29.57 -169.99 -5.03 10.67 15 13 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 14 H -0.27 -4.34 7.11 56.52 0.40 -3.93 15 15 H -0.25 -4.08 7.11 56.52 0.40 -3.68 15 16 O 0.07 1.90 9.58 13.32 0.13 2.03 15 17 N -0.48 -13.71 11.96 33.25 0.40 -13.31 15 18 C 0.09 2.55 7.28 -83.14 -0.61 1.94 15 19 H 0.05 0.93 8.14 -51.92 -0.42 0.51 15 20 H 0.05 0.83 8.08 -51.93 -0.42 0.41 15 21 H 0.06 1.16 8.10 -51.93 -0.42 0.74 15 22 H 0.10 1.77 8.06 -52.49 -0.42 1.34 15 23 H 0.10 1.78 8.06 -52.48 -0.42 1.35 15 24 H 0.10 2.04 8.06 -52.49 -0.42 1.62 15 25 H 0.30 6.16 8.29 -40.82 -0.34 5.83 15 LS Contribution 230.72 15.07 3.48 3.48 Total: -1.00 -29.02 230.72 -5.87 -34.88 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -2.08 Total: 2.40 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -3.44 Total: -23.82 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 1.07 Total: -29.64 kcal Atomic # 8 Polarization: 1.90 SS G_CDS: 0.13 Total: 2.03 kcal Atomic # 14 Polarization: 15.69 SS G_CDS: -5.03 Total: 10.67 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.02 -5.87 -34.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310207.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.470 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds